Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26703 | 5' | -60.8 | NC_005808.1 | + | 34759 | 0.73 | 0.118563 |
Target: 5'- aGcGCGUGCGCCUGGUCAUCgugcagccGCGCCUc -3' miRNA: 3'- gCcCGCACGCGGACUGGUAG--------UGCGGA- -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 28197 | 0.66 | 0.377787 |
Target: 5'- aGGuGCG-GCGCCuUGuCCAggucggcCACGCCg -3' miRNA: 3'- gCC-CGCaCGCGG-ACuGGUa------GUGCGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 14679 | 0.66 | 0.352332 |
Target: 5'- gCGGGUGUugaGCGCUUGaaGCCcggccugcaGUUGCGCCUc -3' miRNA: 3'- -GCCCGCA---CGCGGAC--UGG---------UAGUGCGGA- -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 40148 | 0.66 | 0.33605 |
Target: 5'- -aGGCGaGCGCCUgGGCCGcaguuUCgGCGCCUu -3' miRNA: 3'- gcCCGCaCGCGGA-CUGGU-----AG-UGCGGA- -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 32866 | 0.67 | 0.328117 |
Target: 5'- aCGGuCG-GCGCCgaGAUUGUCGCGCCc -3' miRNA: 3'- -GCCcGCaCGCGGa-CUGGUAGUGCGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 21325 | 0.67 | 0.29778 |
Target: 5'- uCGGGCuUGaUGCC-GGCCAcCGCGCCc -3' miRNA: 3'- -GCCCGcAC-GCGGaCUGGUaGUGCGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 4249 | 0.67 | 0.290544 |
Target: 5'- -uGGCGUagucgGUGCC-GGCCGUCAgCGCCg -3' miRNA: 3'- gcCCGCA-----CGCGGaCUGGUAGU-GCGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 341 | 0.68 | 0.276487 |
Target: 5'- gGuGGCGUcGCGCagcaGGCCGUC-CGCCa -3' miRNA: 3'- gC-CCGCA-CGCGga--CUGGUAGuGCGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 20757 | 0.69 | 0.243726 |
Target: 5'- aGaGGCGcUGCGCCgcgcucGACuCAUCGCGCg- -3' miRNA: 3'- gC-CCGC-ACGCGGa-----CUG-GUAGUGCGga -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 24127 | 0.71 | 0.175354 |
Target: 5'- gGGGuCGUaguccagccggcugcGCGCCUGGCCca-GCGCCUc -3' miRNA: 3'- gCCC-GCA---------------CGCGGACUGGuagUGCGGA- -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 23581 | 0.72 | 0.151659 |
Target: 5'- gCGGGCGggggGCGacgaUGGCCGUCAUGCg- -3' miRNA: 3'- -GCCCGCa---CGCgg--ACUGGUAGUGCGga -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 38215 | 0.72 | 0.136021 |
Target: 5'- cCGGcGCGacgGCGCCUGGCugcgCAUC-CGCCUg -3' miRNA: 3'- -GCC-CGCa--CGCGGACUG----GUAGuGCGGA- -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 30460 | 0.7 | 0.208745 |
Target: 5'- gCGGaaGCGcaGCGCgUGGCgCGUCGCGCCa -3' miRNA: 3'- -GCC--CGCa-CGCGgACUG-GUAGUGCGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 15776 | 0.7 | 0.192934 |
Target: 5'- gGGGCGgcGCaGCCUG-CCAaaaacagCACGCCUa -3' miRNA: 3'- gCCCGCa-CG-CGGACuGGUa------GUGCGGA- -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 41900 | 0.7 | 0.187901 |
Target: 5'- uGGGCGguaucuuggGCGCCcGGCCG--GCGCCg -3' miRNA: 3'- gCCCGCa--------CGCGGaCUGGUagUGCGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 5441 | 0.71 | 0.173492 |
Target: 5'- gGcGGCGUGgGCgaGgucgguaucgACCAUCACGCCg -3' miRNA: 3'- gC-CCGCACgCGgaC----------UGGUAGUGCGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 4640 | 0.71 | 0.168912 |
Target: 5'- uGGGCcacgcUGCGUC-GGCCAUCGCGUCa -3' miRNA: 3'- gCCCGc----ACGCGGaCUGGUAGUGCGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 5757 | 0.73 | 0.111871 |
Target: 5'- cCGGGCagcgaGUGCGCCagggccuUGACCAUCGuguccCGCCa -3' miRNA: 3'- -GCCCG-----CACGCGG-------ACUGGUAGU-----GCGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 1751 | 0.79 | 0.041469 |
Target: 5'- cCGGGCGgucauggccggccUGCGCCUGGCgCGUCGgGCCg -3' miRNA: 3'- -GCCCGC-------------ACGCGGACUG-GUAGUgCGGa -5' |
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26703 | 5' | -60.8 | NC_005808.1 | + | 25996 | 0.66 | 0.360681 |
Target: 5'- -cGGCG-GCGCCaacACCAUCGCGUg- -3' miRNA: 3'- gcCCGCaCGCGGac-UGGUAGUGCGga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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