miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26704 3' -56.1 NC_005808.1 + 19627 0.66 0.649005
Target:  5'- gUCAUGCGGgccgcgaCAUCgGCCagcgucggguUGGugGUGGa -3'
miRNA:   3'- -GGUGCGCCa------GUAGgUGG----------ACCugCACU- -5'
26704 3' -56.1 NC_005808.1 + 3752 0.66 0.649005
Target:  5'- gCACGuCGGUg--CCGCCgcUGGACGUa- -3'
miRNA:   3'- gGUGC-GCCAguaGGUGG--ACCUGCAcu -5'
26704 3' -56.1 NC_005808.1 + 21724 0.66 0.638003
Target:  5'- -aACGCGGUaCGgaugCCACCguUGGGCGcGGc -3'
miRNA:   3'- ggUGCGCCA-GUa---GGUGG--ACCUGCaCU- -5'
26704 3' -56.1 NC_005808.1 + 25909 0.66 0.615992
Target:  5'- gCUACGUGGUCA-CgGcCCUGGAUGccGAg -3'
miRNA:   3'- -GGUGCGCCAGUaGgU-GGACCUGCa-CU- -5'
26704 3' -56.1 NC_005808.1 + 33910 0.66 0.605003
Target:  5'- uCUGCGCGG-CG-CaCACCUGGGCGc-- -3'
miRNA:   3'- -GGUGCGCCaGUaG-GUGGACCUGCacu -5'
26704 3' -56.1 NC_005808.1 + 18525 0.67 0.583104
Target:  5'- cCCGCGCGGUCG-CCGCUacUGuGCGcGGc -3'
miRNA:   3'- -GGUGCGCCAGUaGGUGG--ACcUGCaCU- -5'
26704 3' -56.1 NC_005808.1 + 40362 0.67 0.583104
Target:  5'- -uGCGCGGcCAcgcgCCGCCUGcugcGCGUGGu -3'
miRNA:   3'- ggUGCGCCaGUa---GGUGGACc---UGCACU- -5'
26704 3' -56.1 NC_005808.1 + 28122 0.67 0.583104
Target:  5'- gUCACGCGGUa---CGCCUGGuCGg-- -3'
miRNA:   3'- -GGUGCGCCAguagGUGGACCuGCacu -5'
26704 3' -56.1 NC_005808.1 + 23628 0.67 0.561368
Target:  5'- aCugGCGuuacGUCGUCCGCaucgccaaugUGGACGUGu -3'
miRNA:   3'- gGugCGC----CAGUAGGUGg---------ACCUGCACu -5'
26704 3' -56.1 NC_005808.1 + 27765 0.67 0.550581
Target:  5'- gCCGCcaaCGG-CAUCgACCUGGGCGa-- -3'
miRNA:   3'- -GGUGc--GCCaGUAGgUGGACCUGCacu -5'
26704 3' -56.1 NC_005808.1 + 2394 0.67 0.550581
Target:  5'- gCAUgGCGGUCGcugCCuACCUGGAUG-GAc -3'
miRNA:   3'- gGUG-CGCCAGUa--GG-UGGACCUGCaCU- -5'
26704 3' -56.1 NC_005808.1 + 1750 0.68 0.518635
Target:  5'- aCCGgGCGGUCAuggccggccUgCGCCUGGcGCGUcGGg -3'
miRNA:   3'- -GGUgCGCCAGU---------AgGUGGACC-UGCA-CU- -5'
26704 3' -56.1 NC_005808.1 + 24041 0.68 0.497751
Target:  5'- -aGCGCGGcC-UCCACC--GACGUGAu -3'
miRNA:   3'- ggUGCGCCaGuAGGUGGacCUGCACU- -5'
26704 3' -56.1 NC_005808.1 + 41290 0.68 0.497751
Target:  5'- gCCugGUGGcCGUCgC-CCUGGGCGcGGc -3'
miRNA:   3'- -GGugCGCCaGUAG-GuGGACCUGCaCU- -5'
26704 3' -56.1 NC_005808.1 + 25622 0.68 0.497751
Target:  5'- gCgGCGCGGUCgccagcagcgcGUCCACCUcGGCGa-- -3'
miRNA:   3'- -GgUGCGCCAG-----------UAGGUGGAcCUGCacu -5'
26704 3' -56.1 NC_005808.1 + 25781 0.68 0.477251
Target:  5'- gCCGCGUGaacugCG-CCGCCUGGGCGcGAc -3'
miRNA:   3'- -GGUGCGCca---GUaGGUGGACCUGCaCU- -5'
26704 3' -56.1 NC_005808.1 + 14381 0.69 0.457178
Target:  5'- gCGCGUGGUCGUcggcguggCCgACCUGGACa--- -3'
miRNA:   3'- gGUGCGCCAGUA--------GG-UGGACCUGcacu -5'
26704 3' -56.1 NC_005808.1 + 16198 0.69 0.457178
Target:  5'- gCCACGCGc-CAUUCGCCcgaaGACGUGAg -3'
miRNA:   3'- -GGUGCGCcaGUAGGUGGac--CUGCACU- -5'
26704 3' -56.1 NC_005808.1 + 13135 0.69 0.431777
Target:  5'- gCCGCGCGcuUCGUCgccuggugccaggagCACCUGGGCGcGAc -3'
miRNA:   3'- -GGUGCGCc-AGUAG---------------GUGGACCUGCaCU- -5'
26704 3' -56.1 NC_005808.1 + 41152 0.7 0.416562
Target:  5'- aCCGCGCcGUCAagaagguguuugCCAUCuUGGGCGUGGa -3'
miRNA:   3'- -GGUGCGcCAGUa-----------GGUGG-ACCUGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.