Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26704 | 5' | -59.3 | NC_005808.1 | + | 25631 | 0.66 | 0.451178 |
Target: 5'- uCGCCAGCagcgcguccaCCUcgGCGAgUUCUgccGGCGUc -3' miRNA: 3'- -GCGGUCGg---------GGA--UGCUgAAGGa--CCGCG- -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 25713 | 0.66 | 0.451178 |
Target: 5'- -aCCAGCCCC-GCGGCggggucgucgUCCUcaccGGCGg -3' miRNA: 3'- gcGGUCGGGGaUGCUGa---------AGGA----CCGCg -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 27759 | 0.66 | 0.451178 |
Target: 5'- gCGCUGGCCgCCaACGGCaucgaCCUGG-GCg -3' miRNA: 3'- -GCGGUCGG-GGaUGCUGaa---GGACCgCG- -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 27856 | 0.66 | 0.451178 |
Target: 5'- gCGCCAauGCUgcgcguacugCCUGgGGCUaCCgGGCGCa -3' miRNA: 3'- -GCGGU--CGG----------GGAUgCUGAaGGaCCGCG- -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 6400 | 0.66 | 0.441472 |
Target: 5'- gGCCGGCCCgguguagucGCGGCccaugUCgUUGGCGCc -3' miRNA: 3'- gCGGUCGGGga-------UGCUGa----AG-GACCGCG- -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 18691 | 0.66 | 0.441472 |
Target: 5'- uGCCGGCauggaagCCgcgggcgugGCGcACUUCCUuGGCGUa -3' miRNA: 3'- gCGGUCGg------GGa--------UGC-UGAAGGA-CCGCG- -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 9169 | 0.66 | 0.441472 |
Target: 5'- gGCCGGCa---GCGACaaCUUGGCGCc -3' miRNA: 3'- gCGGUCGgggaUGCUGaaGGACCGCG- -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 32877 | 0.66 | 0.441472 |
Target: 5'- aGUUcGCCC--GCGGCUUCgaGGCGUa -3' miRNA: 3'- gCGGuCGGGgaUGCUGAAGgaCCGCG- -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 18475 | 0.66 | 0.441472 |
Target: 5'- aGCCGGCUggaCUACGACc-CCUacGCGCg -3' miRNA: 3'- gCGGUCGGg--GAUGCUGaaGGAc-CGCG- -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 14653 | 0.66 | 0.441472 |
Target: 5'- uCGCCAuCCCCUACGGg-UCg-GGCaGCa -3' miRNA: 3'- -GCGGUcGGGGAUGCUgaAGgaCCG-CG- -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 32530 | 0.66 | 0.431886 |
Target: 5'- gGCUcGCCCCgACGACg-CCUcGGaCGCu -3' miRNA: 3'- gCGGuCGGGGaUGCUGaaGGA-CC-GCG- -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 42443 | 0.66 | 0.422422 |
Target: 5'- gGCgCAuCCgCCUGCGGggaagCCUGGCGCc -3' miRNA: 3'- gCG-GUcGG-GGAUGCUgaa--GGACCGCG- -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 27502 | 0.66 | 0.422422 |
Target: 5'- cCGgCGGCCUCggcCGccaGCUUCUcGGCGCg -3' miRNA: 3'- -GCgGUCGGGGau-GC---UGAAGGaCCGCG- -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 14617 | 0.66 | 0.422422 |
Target: 5'- gCGUCGGCUUCcAUG-CUUCC-GGCGCc -3' miRNA: 3'- -GCGGUCGGGGaUGCuGAAGGaCCGCG- -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 12747 | 0.66 | 0.422422 |
Target: 5'- uGCCGcGCCCa---GACg-CUUGGCGCg -3' miRNA: 3'- gCGGU-CGGGgaugCUGaaGGACCGCG- -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 5101 | 0.66 | 0.413084 |
Target: 5'- gGCCGGCCCa-GCGuccgguGCgg-CUGGCGCc -3' miRNA: 3'- gCGGUCGGGgaUGC------UGaagGACCGCG- -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 34909 | 0.66 | 0.413084 |
Target: 5'- aGCCGGCCgCCgaggucaagcCGACgaCCUGGCc- -3' miRNA: 3'- gCGGUCGG-GGau--------GCUGaaGGACCGcg -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 27422 | 0.66 | 0.403874 |
Target: 5'- gCGCCuggcgcaccGCgCCCgGCGGCcgcaggcCCUGGCGCu -3' miRNA: 3'- -GCGGu--------CG-GGGaUGCUGaa-----GGACCGCG- -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 16772 | 0.66 | 0.403874 |
Target: 5'- uGaCCGGCgCCaACGGCggCCcGGUGCa -3' miRNA: 3'- gC-GGUCGgGGaUGCUGaaGGaCCGCG- -5' |
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26704 | 5' | -59.3 | NC_005808.1 | + | 10284 | 0.66 | 0.403874 |
Target: 5'- aCGCCGGCCUUgaugGCGGCgaUgaGGuCGCg -3' miRNA: 3'- -GCGGUCGGGGa---UGCUGaaGgaCC-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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