miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26705 5' -60.8 NC_005808.1 + 6074 0.66 0.397729
Target:  5'- uGCAGGGAUACgGCCccGCGaCCCGAUc -3'
miRNA:   3'- cCGUUCCUGUG-CGGccUGCcGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 29420 0.66 0.397729
Target:  5'- cGGcCAAGGGCGC-CCaGcGCGG-CCGACa -3'
miRNA:   3'- -CC-GUUCCUGUGcGGcC-UGCCgGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 8641 0.66 0.38888
Target:  5'- uGGCGAGGu--CGCCGGccuucaucgcGCGG-UCGGCa -3'
miRNA:   3'- -CCGUUCCuguGCGGCC----------UGCCgGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 9312 0.66 0.38888
Target:  5'- cGGCGAccuggcGGcGCACGUCGGcGCGGCgggCGGCg -3'
miRNA:   3'- -CCGUU------CC-UGUGCGGCC-UGCCGg--GCUG- -5'
26705 5' -60.8 NC_005808.1 + 27964 0.66 0.38888
Target:  5'- uGGCGA--GCACGUccuCGGugGGCUgGGCc -3'
miRNA:   3'- -CCGUUccUGUGCG---GCCugCCGGgCUG- -5'
26705 5' -60.8 NC_005808.1 + 1340 0.66 0.38888
Target:  5'- cGCGAGGAa--GCCGuggucGGCGGCCUuGCg -3'
miRNA:   3'- cCGUUCCUgugCGGC-----CUGCCGGGcUG- -5'
26705 5' -60.8 NC_005808.1 + 4628 0.66 0.38888
Target:  5'- cGGCGGGGAugcugggcCACGCUGcGuCGGCCaucGCg -3'
miRNA:   3'- -CCGUUCCU--------GUGCGGC-CuGCCGGgc-UG- -5'
26705 5' -60.8 NC_005808.1 + 17143 0.66 0.383633
Target:  5'- uGGCGAGGccgcuuugguacuuCACGUCGucGAUGcGCCCGAa -3'
miRNA:   3'- -CCGUUCCu-------------GUGCGGC--CUGC-CGGGCUg -5'
26705 5' -60.8 NC_005808.1 + 34427 0.66 0.380161
Target:  5'- cGGCAgcauccGGGcgcACGCGCagGGACGcaGCgCCGACa -3'
miRNA:   3'- -CCGU------UCC---UGUGCGg-CCUGC--CG-GGCUG- -5'
26705 5' -60.8 NC_005808.1 + 14897 0.66 0.380161
Target:  5'- cGGCGAGc-CGCuGCCGGcgcGCGGCCUGu- -3'
miRNA:   3'- -CCGUUCcuGUG-CGGCC---UGCCGGGCug -5'
26705 5' -60.8 NC_005808.1 + 13735 0.66 0.379296
Target:  5'- aGCGAGGACguggcgcgGCGCUGGGacagcuuCGGCaaguCCGGCc -3'
miRNA:   3'- cCGUUCCUG--------UGCGGCCU-------GCCG----GGCUG- -5'
26705 5' -60.8 NC_005808.1 + 38831 0.66 0.371574
Target:  5'- cGGCAcgaccgAGGcUACGUCcagcGGCGGCaCCGACg -3'
miRNA:   3'- -CCGU------UCCuGUGCGGc---CUGCCG-GGCUG- -5'
26705 5' -60.8 NC_005808.1 + 14737 0.66 0.363119
Target:  5'- uGGCGAgcgcGGACACGUucuugagcagCGGcGCGG-CCGGCg -3'
miRNA:   3'- -CCGUU----CCUGUGCG----------GCC-UGCCgGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 17514 0.66 0.362281
Target:  5'- cGGCGccGGGCGCGCUgcgcugGGugGcgaugcuGCCCGAUg -3'
miRNA:   3'- -CCGUu-CCUGUGCGG------CCugC-------CGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 36623 0.66 0.358111
Target:  5'- aGGCAgAGGuguugcuguuugcuuACGCGCUGGACaauGGCCCc-- -3'
miRNA:   3'- -CCGU-UCC---------------UGUGCGGCCUG---CCGGGcug -5'
26705 5' -60.8 NC_005808.1 + 4352 0.66 0.3548
Target:  5'- aGCAgAGGAaucgGCCGGACGGCa-GGCg -3'
miRNA:   3'- cCGU-UCCUgug-CGGCCUGCCGggCUG- -5'
26705 5' -60.8 NC_005808.1 + 29920 0.66 0.3548
Target:  5'- aGGCGGGccucGACACGCgccgcgcaugaUGGGCGacgaCCCGACg -3'
miRNA:   3'- -CCGUUC----CUGUGCG-----------GCCUGCc---GGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 9870 0.66 0.3548
Target:  5'- uGGCAccGGCGCGCUGcuucuCGGCCaGGCg -3'
miRNA:   3'- -CCGUucCUGUGCGGCcu---GCCGGgCUG- -5'
26705 5' -60.8 NC_005808.1 + 41960 0.67 0.346615
Target:  5'- gGGCAccGACucgACGCCGGACGccguguCCaCGGCg -3'
miRNA:   3'- -CCGUucCUG---UGCGGCCUGCc-----GG-GCUG- -5'
26705 5' -60.8 NC_005808.1 + 42285 0.67 0.338567
Target:  5'- cGGUAcGG-CACGCCcuGGACGGaagagcgcgccuUCCGGCg -3'
miRNA:   3'- -CCGUuCCuGUGCGG--CCUGCC------------GGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.