miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26705 5' -60.8 NC_005808.1 + 18009 1.1 0.000192
Target:  5'- cGGCAAGGACACGCCGGACGGCCCGACc -3'
miRNA:   3'- -CCGUUCCUGUGCGGCCUGCCGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 15861 0.79 0.042734
Target:  5'- cGCAGcGGGCGCGCUGGcggUGGCCCGGCu -3'
miRNA:   3'- cCGUU-CCUGUGCGGCCu--GCCGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 23539 0.78 0.058433
Target:  5'- cGGCGAGGACACGCUGaucGACGcCgCCGGCg -3'
miRNA:   3'- -CCGUUCCUGUGCGGC---CUGCcG-GGCUG- -5'
26705 5' -60.8 NC_005808.1 + 6381 0.77 0.06011
Target:  5'- cGGCAaucAGGcGCAgGCCGGcCGGCCCGGu -3'
miRNA:   3'- -CCGU---UCC-UGUgCGGCCuGCCGGGCUg -5'
26705 5' -60.8 NC_005808.1 + 16577 0.75 0.09681
Target:  5'- aGCGc-GACGCGCCGGACGaGgCCGACc -3'
miRNA:   3'- cCGUucCUGUGCGGCCUGC-CgGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 17059 0.73 0.120678
Target:  5'- cGGCuacgGGGGCGCuGCCGGcgGCGGCaaaaCCGACc -3'
miRNA:   3'- -CCGu---UCCUGUG-CGGCC--UGCCG----GGCUG- -5'
26705 5' -60.8 NC_005808.1 + 30593 0.73 0.124021
Target:  5'- gGGCuGGGAUACGUCGG-UGGCaUCGGCg -3'
miRNA:   3'- -CCGuUCCUGUGCGGCCuGCCG-GGCUG- -5'
26705 5' -60.8 NC_005808.1 + 17862 0.73 0.12745
Target:  5'- gGGuCGAGGcCGCGCaGGcgcgguggaaGCGGCCCGACc -3'
miRNA:   3'- -CC-GUUCCuGUGCGgCC----------UGCCGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 27492 0.73 0.12745
Target:  5'- cGCGAGGA--UGCCGG-CGGCCuCGGCc -3'
miRNA:   3'- cCGUUCCUguGCGGCCuGCCGG-GCUG- -5'
26705 5' -60.8 NC_005808.1 + 22798 0.73 0.130966
Target:  5'- gGGCcGGucaGCAuggUGCCGGACuGGCCCGACu -3'
miRNA:   3'- -CCGuUCc--UGU---GCGGCCUG-CCGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 28381 0.73 0.138268
Target:  5'- uGGCGAGGuguuccaguuCgACGCCGG-CGGCgCGGCg -3'
miRNA:   3'- -CCGUUCCu---------G-UGCGGCCuGCCGgGCUG- -5'
26705 5' -60.8 NC_005808.1 + 24507 0.73 0.138268
Target:  5'- aGGCGuccuGGuuCGCGCCGGcuucgGCGGCCCaGCa -3'
miRNA:   3'- -CCGUu---CCu-GUGCGGCC-----UGCCGGGcUG- -5'
26705 5' -60.8 NC_005808.1 + 35510 0.72 0.145943
Target:  5'- cGCGuGGGCGCGCCGuGGguaGGCCgCGGCg -3'
miRNA:   3'- cCGUuCCUGUGCGGC-CUg--CCGG-GCUG- -5'
26705 5' -60.8 NC_005808.1 + 4672 0.71 0.171346
Target:  5'- uGGCGGGcaccaGCGCGCCGGAUaGCgCGGCg -3'
miRNA:   3'- -CCGUUCc----UGUGCGGCCUGcCGgGCUG- -5'
26705 5' -60.8 NC_005808.1 + 18374 0.71 0.180656
Target:  5'- cGGCGAGGuugGCcuugccgaugGCGCCGGugGCGGCCacguCGGCg -3'
miRNA:   3'- -CCGUUCC---UG----------UGCGGCC--UGCCGG----GCUG- -5'
26705 5' -60.8 NC_005808.1 + 26256 0.71 0.185477
Target:  5'- aGGCAcGGGCAccCGCCGGccugguCGGCUCGcGCa -3'
miRNA:   3'- -CCGUuCCUGU--GCGGCCu-----GCCGGGC-UG- -5'
26705 5' -60.8 NC_005808.1 + 14855 0.71 0.190412
Target:  5'- cGGCcAGcGccGCACGCUGGGCGccuuuaaguuGCCCGGCu -3'
miRNA:   3'- -CCGuUC-C--UGUGCGGCCUGC----------CGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 40873 0.7 0.195461
Target:  5'- cGCGAGGACuuggacgcccuCGCCGGcacgcCGGCCCacGGCg -3'
miRNA:   3'- cCGUUCCUGu----------GCGGCCu----GCCGGG--CUG- -5'
26705 5' -60.8 NC_005808.1 + 24570 0.7 0.195461
Target:  5'- uGGCGAGGccggcCACgGUCGGGCcGUCCGGCg -3'
miRNA:   3'- -CCGUUCCu----GUG-CGGCCUGcCGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 6237 0.7 0.200627
Target:  5'- cGGcCAGGGccuGCACGCCGGuaACGGUgCGGu -3'
miRNA:   3'- -CC-GUUCC---UGUGCGGCC--UGCCGgGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.