miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26705 5' -60.8 NC_005808.1 + 42285 0.67 0.338567
Target:  5'- cGGUAcGG-CACGCCcuGGACGGaagagcgcgccuUCCGGCg -3'
miRNA:   3'- -CCGUuCCuGUGCGG--CCUGCC------------GGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 17269 0.67 0.336179
Target:  5'- cGGCcuGGACaaucccggcgacgaGCGCCGGuggcaGGgCCGGCc -3'
miRNA:   3'- -CCGuuCCUG--------------UGCGGCCug---CCgGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 5520 0.67 0.330655
Target:  5'- cGU-AGGACACGCCGG-CcGCCCa-- -3'
miRNA:   3'- cCGuUCCUGUGCGGCCuGcCGGGcug -5'
26705 5' -60.8 NC_005808.1 + 6472 0.67 0.315242
Target:  5'- cGCAGGaacuGCACGCCGcGCaGGCCCG-Ca -3'
miRNA:   3'- cCGUUCc---UGUGCGGCcUG-CCGGGCuG- -5'
26705 5' -60.8 NC_005808.1 + 41904 0.67 0.315242
Target:  5'- cGGUAucuuGGGCGCccgGCCGGcgccgccguagGCGGCCUGGu -3'
miRNA:   3'- -CCGUu---CCUGUG---CGGCC-----------UGCCGGGCUg -5'
26705 5' -60.8 NC_005808.1 + 30573 0.67 0.315242
Target:  5'- gGGCAA-GACcuCGCCGGccACGGCCgcgcugcuggcCGACg -3'
miRNA:   3'- -CCGUUcCUGu-GCGGCC--UGCCGG-----------GCUG- -5'
26705 5' -60.8 NC_005808.1 + 27700 0.67 0.315242
Target:  5'- aGGCc---GCGCGCCGGcaGCGGCUCGcCg -3'
miRNA:   3'- -CCGuuccUGUGCGGCC--UGCCGGGCuG- -5'
26705 5' -60.8 NC_005808.1 + 10027 0.67 0.307742
Target:  5'- cGGCGGuguccuGAUACGUCGGAgCGGCaucgCCGGCg -3'
miRNA:   3'- -CCGUUc-----CUGUGCGGCCU-GCCG----GGCUG- -5'
26705 5' -60.8 NC_005808.1 + 32258 0.68 0.300379
Target:  5'- --gAAGGcACACGCCGcagcgacggcuACGGCCUGGCg -3'
miRNA:   3'- ccgUUCC-UGUGCGGCc----------UGCCGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 32476 0.68 0.300379
Target:  5'- aGGUggGGGCG-GCC-GAUGcGCCCGAa -3'
miRNA:   3'- -CCGuuCCUGUgCGGcCUGC-CGGGCUg -5'
26705 5' -60.8 NC_005808.1 + 24457 0.68 0.300379
Target:  5'- cGGCAAGcuGCGCgaGCCGGGCGacaaGUUCGACg -3'
miRNA:   3'- -CCGUUCc-UGUG--CGGCCUGC----CGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 28439 0.68 0.293153
Target:  5'- -uCAAGGguaucaACGCGCUGGaACGGCCgGAa -3'
miRNA:   3'- ccGUUCC------UGUGCGGCC-UGCCGGgCUg -5'
26705 5' -60.8 NC_005808.1 + 25571 0.68 0.293152
Target:  5'- cGGCGucGGAguugUACGCCGcGgucuGCGGCCCaGGCa -3'
miRNA:   3'- -CCGUu-CCU----GUGCGGC-C----UGCCGGG-CUG- -5'
26705 5' -60.8 NC_005808.1 + 32008 0.68 0.286062
Target:  5'- uGCGAaacccucGACACGCUGGACGcCCaCGACa -3'
miRNA:   3'- cCGUUc------CUGUGCGGCCUGCcGG-GCUG- -5'
26705 5' -60.8 NC_005808.1 + 34537 0.68 0.279109
Target:  5'- aGGCAGcgaccuGGGCGCGCgucaUGGACGGCggcaaggaCGGCg -3'
miRNA:   3'- -CCGUU------CCUGUGCG----GCCUGCCGg-------GCUG- -5'
26705 5' -60.8 NC_005808.1 + 18847 0.68 0.279108
Target:  5'- cGGCAuguagaAgGCCGGGCGGCCCa-- -3'
miRNA:   3'- -CCGUuccug-UgCGGCCUGCCGGGcug -5'
26705 5' -60.8 NC_005808.1 + 18845 0.68 0.265605
Target:  5'- cGGCccGGugGCGCCGGcAUGGCgCUGcuGCg -3'
miRNA:   3'- -CCGuuCCugUGCGGCC-UGCCG-GGC--UG- -5'
26705 5' -60.8 NC_005808.1 + 15239 0.68 0.265605
Target:  5'- uGGCu-GGACGagUGCUGcGAgguCGGCCCGGCc -3'
miRNA:   3'- -CCGuuCCUGU--GCGGC-CU---GCCGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 18566 0.69 0.259054
Target:  5'- cGGUgGAGGcCGCGCuCGcgguGACGGCCUGGCc -3'
miRNA:   3'- -CCG-UUCCuGUGCG-GC----CUGCCGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 14796 0.69 0.259054
Target:  5'- cGCGAGGACGUGCUGcGGCuGCgCGGCg -3'
miRNA:   3'- cCGUUCCUGUGCGGC-CUGcCGgGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.