miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26705 5' -60.8 NC_005808.1 + 1340 0.66 0.38888
Target:  5'- cGCGAGGAa--GCCGuggucGGCGGCCUuGCg -3'
miRNA:   3'- cCGUUCCUgugCGGC-----CUGCCGGGcUG- -5'
26705 5' -60.8 NC_005808.1 + 2693 0.69 0.246972
Target:  5'- cGGCAGguugucguaguucguGGugaACACGuuGGccggacgcuugagcGCGGCCCGGCg -3'
miRNA:   3'- -CCGUU---------------CC---UGUGCggCC--------------UGCCGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 4049 0.7 0.211316
Target:  5'- cGGCGAGcGGCAgGCCa-GCGGCCCa-- -3'
miRNA:   3'- -CCGUUC-CUGUgCGGccUGCCGGGcug -5'
26705 5' -60.8 NC_005808.1 + 4352 0.66 0.3548
Target:  5'- aGCAgAGGAaucgGCCGGACGGCa-GGCg -3'
miRNA:   3'- cCGU-UCCUgug-CGGCCUGCCGggCUG- -5'
26705 5' -60.8 NC_005808.1 + 4628 0.66 0.38888
Target:  5'- cGGCGGGGAugcugggcCACGCUGcGuCGGCCaucGCg -3'
miRNA:   3'- -CCGUUCCU--------GUGCGGC-CuGCCGGgc-UG- -5'
26705 5' -60.8 NC_005808.1 + 4672 0.71 0.171346
Target:  5'- uGGCGGGcaccaGCGCGCCGGAUaGCgCGGCg -3'
miRNA:   3'- -CCGUUCc----UGUGCGGCCUGcCGgGCUG- -5'
26705 5' -60.8 NC_005808.1 + 5520 0.67 0.330655
Target:  5'- cGU-AGGACACGCCGG-CcGCCCa-- -3'
miRNA:   3'- cCGuUCCUGUGCGGCCuGcCGGGcug -5'
26705 5' -60.8 NC_005808.1 + 6074 0.66 0.397729
Target:  5'- uGCAGGGAUACgGCCccGCGaCCCGAUc -3'
miRNA:   3'- cCGUUCCUGUG-CGGccUGCcGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 6237 0.7 0.200627
Target:  5'- cGGcCAGGGccuGCACGCCGGuaACGGUgCGGu -3'
miRNA:   3'- -CC-GUUCC---UGUGCGGCC--UGCCGgGCUg -5'
26705 5' -60.8 NC_005808.1 + 6381 0.77 0.06011
Target:  5'- cGGCAaucAGGcGCAgGCCGGcCGGCCCGGu -3'
miRNA:   3'- -CCGU---UCC-UGUgCGGCCuGCCGGGCUg -5'
26705 5' -60.8 NC_005808.1 + 6472 0.67 0.315242
Target:  5'- cGCAGGaacuGCACGCCGcGCaGGCCCG-Ca -3'
miRNA:   3'- cCGUUCc---UGUGCGGCcUG-CCGGGCuG- -5'
26705 5' -60.8 NC_005808.1 + 8641 0.66 0.38888
Target:  5'- uGGCGAGGu--CGCCGGccuucaucgcGCGG-UCGGCa -3'
miRNA:   3'- -CCGUUCCuguGCGGCC----------UGCCgGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 9213 0.69 0.252636
Target:  5'- cGGCGcGGcGCACGUucUGcGGCGcGCCCGGCg -3'
miRNA:   3'- -CCGUuCC-UGUGCG--GC-CUGC-CGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 9312 0.66 0.38888
Target:  5'- cGGCGAccuggcGGcGCACGUCGGcGCGGCgggCGGCg -3'
miRNA:   3'- -CCGUU------CC-UGUGCGGCC-UGCCGg--GCUG- -5'
26705 5' -60.8 NC_005808.1 + 9870 0.66 0.3548
Target:  5'- uGGCAccGGCGCGCUGcuucuCGGCCaGGCg -3'
miRNA:   3'- -CCGUucCUGUGCGGCcu---GCCGGgCUG- -5'
26705 5' -60.8 NC_005808.1 + 10027 0.67 0.307742
Target:  5'- cGGCGGuguccuGAUACGUCGGAgCGGCaucgCCGGCg -3'
miRNA:   3'- -CCGUUc-----CUGUGCGGCCU-GCCG----GGCUG- -5'
26705 5' -60.8 NC_005808.1 + 10751 0.69 0.234165
Target:  5'- cGcCAAGGGCGCGCUcGAcuuCGGCCCG-Ca -3'
miRNA:   3'- cC-GUUCCUGUGCGGcCU---GCCGGGCuG- -5'
26705 5' -60.8 NC_005808.1 + 11087 0.69 0.252001
Target:  5'- aGCGAGGcccagcaGCACGCCGG-CGGCaaGGu -3'
miRNA:   3'- cCGUUCC-------UGUGCGGCCuGCCGggCUg -5'
26705 5' -60.8 NC_005808.1 + 12577 0.7 0.204313
Target:  5'- gGGCAccaAGGGCGCgGCCGugcaguuggagcacGAUGGCCCGu- -3'
miRNA:   3'- -CCGU---UCCUGUG-CGGC--------------CUGCCGGGCug -5'
26705 5' -60.8 NC_005808.1 + 13009 0.69 0.240192
Target:  5'- uGGCAAaccGCGCGCCuGGGCGcGgCCGACc -3'
miRNA:   3'- -CCGUUcc-UGUGCGG-CCUGC-CgGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.