miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26705 5' -60.8 NC_005808.1 + 37742 0.69 0.257115
Target:  5'- cGGCGAGGAUugGaagcuggccgcuuuCCGugaauucgacGACGGCgCCGGCc -3'
miRNA:   3'- -CCGUUCCUGugC--------------GGC----------CUGCCG-GGCUG- -5'
26705 5' -60.8 NC_005808.1 + 16116 0.7 0.205911
Target:  5'- cGGCu---GCACGUCGGugGcCCCGACg -3'
miRNA:   3'- -CCGuuccUGUGCGGCCugCcGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 34595 0.7 0.21077
Target:  5'- uGGCGccaAGGGCACGUCcGACGccguggugcugcuGCCUGACg -3'
miRNA:   3'- -CCGU---UCCUGUGCGGcCUGC-------------CGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 16006 0.69 0.232974
Target:  5'- cGCAGGGACAgguCGCCGGugacgaaaccguUGGCCUGcCa -3'
miRNA:   3'- cCGUUCCUGU---GCGGCCu-----------GCCGGGCuG- -5'
26705 5' -60.8 NC_005808.1 + 10751 0.69 0.234165
Target:  5'- cGcCAAGGGCGCGCUcGAcuuCGGCCCG-Ca -3'
miRNA:   3'- cC-GUUCCUGUGCGGcCU---GCCGGGCuG- -5'
26705 5' -60.8 NC_005808.1 + 25747 0.69 0.234165
Target:  5'- cGGCAGcacgcuGGGCGCGCUgcuGGGCGGCggcaaCGAUg -3'
miRNA:   3'- -CCGUU------CCUGUGCGG---CCUGCCGg----GCUG- -5'
26705 5' -60.8 NC_005808.1 + 41627 0.69 0.234165
Target:  5'- cGGUgAAGGGCugGCUcGACacguGGCUCGACa -3'
miRNA:   3'- -CCG-UUCCUGugCGGcCUG----CCGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 21456 0.69 0.246349
Target:  5'- cGGCGGGGGCG-GCaGGAUguuGGCCuCGACc -3'
miRNA:   3'- -CCGUUCCUGUgCGgCCUG---CCGG-GCUG- -5'
26705 5' -60.8 NC_005808.1 + 9213 0.69 0.252636
Target:  5'- cGGCGcGGcGCACGUucUGcGGCGcGCCCGGCg -3'
miRNA:   3'- -CCGUuCC-UGUGCG--GC-CUGC-CGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 6237 0.7 0.200627
Target:  5'- cGGcCAGGGccuGCACGCCGGuaACGGUgCGGu -3'
miRNA:   3'- -CC-GUUCC---UGUGCGGCC--UGCCGgGCUg -5'
26705 5' -60.8 NC_005808.1 + 24570 0.7 0.195461
Target:  5'- uGGCGAGGccggcCACgGUCGGGCcGUCCGGCg -3'
miRNA:   3'- -CCGUUCCu----GUG-CGGCCUGcCGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 14855 0.71 0.190412
Target:  5'- cGGCcAGcGccGCACGCUGGGCGccuuuaaguuGCCCGGCu -3'
miRNA:   3'- -CCGuUC-C--UGUGCGGCCUGC----------CGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 16577 0.75 0.09681
Target:  5'- aGCGc-GACGCGCCGGACGaGgCCGACc -3'
miRNA:   3'- cCGUucCUGUGCGGCCUGC-CgGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 30593 0.73 0.124021
Target:  5'- gGGCuGGGAUACGUCGG-UGGCaUCGGCg -3'
miRNA:   3'- -CCGuUCCUGUGCGGCCuGCCG-GGCUG- -5'
26705 5' -60.8 NC_005808.1 + 27492 0.73 0.12745
Target:  5'- cGCGAGGA--UGCCGG-CGGCCuCGGCc -3'
miRNA:   3'- cCGUUCCUguGCGGCCuGCCGG-GCUG- -5'
26705 5' -60.8 NC_005808.1 + 22798 0.73 0.130966
Target:  5'- gGGCcGGucaGCAuggUGCCGGACuGGCCCGACu -3'
miRNA:   3'- -CCGuUCc--UGU---GCGGCCUG-CCGGGCUG- -5'
26705 5' -60.8 NC_005808.1 + 28381 0.73 0.138268
Target:  5'- uGGCGAGGuguuccaguuCgACGCCGG-CGGCgCGGCg -3'
miRNA:   3'- -CCGUUCCu---------G-UGCGGCCuGCCGgGCUG- -5'
26705 5' -60.8 NC_005808.1 + 4672 0.71 0.171346
Target:  5'- uGGCGGGcaccaGCGCGCCGGAUaGCgCGGCg -3'
miRNA:   3'- -CCGUUCc----UGUGCGGCCUGcCGgGCUG- -5'
26705 5' -60.8 NC_005808.1 + 18374 0.71 0.180656
Target:  5'- cGGCGAGGuugGCcuugccgaugGCGCCGGugGCGGCCacguCGGCg -3'
miRNA:   3'- -CCGUUCC---UG----------UGCGGCC--UGCCGG----GCUG- -5'
26705 5' -60.8 NC_005808.1 + 26256 0.71 0.185477
Target:  5'- aGGCAcGGGCAccCGCCGGccugguCGGCUCGcGCa -3'
miRNA:   3'- -CCGUuCCUGU--GCGGCCu-----GCCGGGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.