Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26706 | 5' | -62.3 | NC_005808.1 | + | 16827 | 1.06 | 0.000221 |
Target: 5'- cAUCGCGGCCAUCGUUGCCGCCGCCCAg -3' miRNA: 3'- -UAGCGCCGGUAGCAACGGCGGCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 8038 | 0.74 | 0.070069 |
Target: 5'- --gGCcGCCGUCcUUGCCGCCGUCCAu -3' miRNA: 3'- uagCGcCGGUAGcAACGGCGGCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 37026 | 0.73 | 0.080709 |
Target: 5'- gGUgGCGGCCAgCGUUGgCGCCGUCg- -3' miRNA: 3'- -UAgCGCCGGUaGCAACgGCGGCGGgu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 6414 | 0.73 | 0.092882 |
Target: 5'- aGUCGCGGCCcauGUCGUUGgCGCCuGUCaCGg -3' miRNA: 3'- -UAGCGCCGG---UAGCAACgGCGG-CGG-GU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 11565 | 0.73 | 0.095518 |
Target: 5'- -cCGcCGGUCAUCGaaGCCauGCCGCCCAg -3' miRNA: 3'- uaGC-GCCGGUAGCaaCGG--CGGCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 19014 | 0.72 | 0.098224 |
Target: 5'- -aUGaCGGCCAUCGUcGCCccCCGCCCGc -3' miRNA: 3'- uaGC-GCCGGUAGCAaCGGc-GGCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 33237 | 0.72 | 0.099326 |
Target: 5'- -aCGCGGCCGcaucaUCaagcaacugcaaaagGaUGCCGCCGCCCGc -3' miRNA: 3'- uaGCGCCGGU-----AG---------------CaACGGCGGCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 33763 | 0.72 | 0.103855 |
Target: 5'- -gCGCuGGCCcgCGUUGCgGCUGgCCCGa -3' miRNA: 3'- uaGCG-CCGGuaGCAACGgCGGC-GGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 7555 | 0.71 | 0.132053 |
Target: 5'- cUCGCGGCCggGUCGUacuuaaucggauagUaGCCGCCGCgUAg -3' miRNA: 3'- uAGCGCCGG--UAGCA--------------A-CGGCGGCGgGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 33813 | 0.7 | 0.14449 |
Target: 5'- -gCGCGGCCGacccaUCGUgcGCCGCgugcUGCCCGa -3' miRNA: 3'- uaGCGCCGGU-----AGCAa-CGGCG----GCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 9992 | 0.7 | 0.148466 |
Target: 5'- -gCGUGGCgggGUCGaaagUGCCGCgCGCCCGg -3' miRNA: 3'- uaGCGCCGg--UAGCa---ACGGCG-GCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 32315 | 0.7 | 0.150084 |
Target: 5'- cAUCGCcGCCAUCaagGCCggcgucccgacaaccGCCGCCCAg -3' miRNA: 3'- -UAGCGcCGGUAGcaaCGG---------------CGGCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 20180 | 0.7 | 0.152541 |
Target: 5'- cUUGCGGCU-UCGccUUGUCGUCGCCCu -3' miRNA: 3'- uAGCGCCGGuAGC--AACGGCGGCGGGu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 3875 | 0.7 | 0.156717 |
Target: 5'- cGUCGCuguaGGCCG-CGcUGCCGUCGCCg- -3' miRNA: 3'- -UAGCG----CCGGUaGCaACGGCGGCGGgu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 32357 | 0.69 | 0.160996 |
Target: 5'- gGUCGCuGCgGUCGccGCCgaggccccgGCCGCCCAg -3' miRNA: 3'- -UAGCGcCGgUAGCaaCGG---------CGGCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 37677 | 0.69 | 0.16538 |
Target: 5'- cGUCGCGGgCAUCGcUGCCGaCGUuuCCAc -3' miRNA: 3'- -UAGCGCCgGUAGCaACGGCgGCG--GGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 38172 | 0.69 | 0.169871 |
Target: 5'- uGUUGCGGCCGg-GUacgaccuacgacUGCCGCaCGCUCAa -3' miRNA: 3'- -UAGCGCCGGUagCA------------ACGGCG-GCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 34017 | 0.69 | 0.169871 |
Target: 5'- gGUCGcCGuGaCCGUCGUgucgcgccUGUCGCUGCCCGc -3' miRNA: 3'- -UAGC-GC-C-GGUAGCA--------ACGGCGGCGGGU- -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 5155 | 0.69 | 0.179181 |
Target: 5'- --gGCGGCCGUCGcUGCUcaCGCCCu -3' miRNA: 3'- uagCGCCGGUAGCaACGGcgGCGGGu -5' |
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26706 | 5' | -62.3 | NC_005808.1 | + | 8213 | 0.69 | 0.179181 |
Target: 5'- cAUgGCGGCCAguUCGUgcgcgGCCG-UGCCCu -3' miRNA: 3'- -UAgCGCCGGU--AGCAa----CGGCgGCGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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