miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26706 5' -62.3 NC_005808.1 + 22233 0.66 0.264302
Target:  5'- -aCGCGGCCcUgGUUGUCGgCCGCg-- -3'
miRNA:   3'- uaGCGCCGGuAgCAACGGC-GGCGggu -5'
26706 5' -62.3 NC_005808.1 + 9215 0.68 0.204458
Target:  5'- -gCGCGGCgCA-CGUucUGCgGCgCGCCCGg -3'
miRNA:   3'- uaGCGCCG-GUaGCA--ACGgCG-GCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 3744 0.68 0.20987
Target:  5'- gGUgGUgGGCaCGUCGgUGCCGCCGCUgGa -3'
miRNA:   3'- -UAgCG-CCG-GUAGCaACGGCGGCGGgU- -5'
26706 5' -62.3 NC_005808.1 + 19154 0.68 0.215406
Target:  5'- -cCGuCaGCCAgauggaugCGUUGUCGCUGCCCGu -3'
miRNA:   3'- uaGC-GcCGGUa-------GCAACGGCGGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 38408 0.68 0.215406
Target:  5'- cUCGCGGCCAacaugcccgccaUCGagGCgGCCGgCUAc -3'
miRNA:   3'- uAGCGCCGGU------------AGCaaCGgCGGCgGGU- -5'
26706 5' -62.3 NC_005808.1 + 14297 0.67 0.244984
Target:  5'- -aUGCGGCCcacGUCGUUGCugaacuggCGCgCGCCUu -3'
miRNA:   3'- uaGCGCCGG---UAGCAACG--------GCG-GCGGGu -5'
26706 5' -62.3 NC_005808.1 + 12722 0.67 0.25129
Target:  5'- aGUCGCccGGcCCGUUGgugcugggUGCCGC-GCCCAg -3'
miRNA:   3'- -UAGCG--CC-GGUAGCa-------ACGGCGgCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 28837 0.67 0.25129
Target:  5'- gGUUGCGGCCGgacUUGCCgaaGCUGuCCCAg -3'
miRNA:   3'- -UAGCGCCGGUagcAACGG---CGGC-GGGU- -5'
26706 5' -62.3 NC_005808.1 + 12625 0.67 0.257729
Target:  5'- -aCGCGcucGgCAUCGcUGCUGCCGUCCu -3'
miRNA:   3'- uaGCGC---CgGUAGCaACGGCGGCGGGu -5'
26706 5' -62.3 NC_005808.1 + 29996 0.69 0.190949
Target:  5'- cGUCGaacgGGCCAUCGUgcuccaacugcacgGCCGC-GCCCu -3'
miRNA:   3'- -UAGCg---CCGGUAGCAa-------------CGGCGgCGGGu -5'
26706 5' -62.3 NC_005808.1 + 38172 0.69 0.169871
Target:  5'- uGUUGCGGCCGg-GUacgaccuacgacUGCCGCaCGCUCAa -3'
miRNA:   3'- -UAGCGCCGGUagCA------------ACGGCG-GCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 34017 0.69 0.169871
Target:  5'- gGUCGcCGuGaCCGUCGUgucgcgccUGUCGCUGCCCGc -3'
miRNA:   3'- -UAGC-GC-C-GGUAGCA--------ACGGCGGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 6414 0.73 0.092882
Target:  5'- aGUCGCGGCCcauGUCGUUGgCGCCuGUCaCGg -3'
miRNA:   3'- -UAGCGCCGG---UAGCAACgGCGG-CGG-GU- -5'
26706 5' -62.3 NC_005808.1 + 11565 0.73 0.095518
Target:  5'- -cCGcCGGUCAUCGaaGCCauGCCGCCCAg -3'
miRNA:   3'- uaGC-GCCGGUAGCaaCGG--CGGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 7555 0.71 0.132053
Target:  5'- cUCGCGGCCggGUCGUacuuaaucggauagUaGCCGCCGCgUAg -3'
miRNA:   3'- uAGCGCCGG--UAGCA--------------A-CGGCGGCGgGU- -5'
26706 5' -62.3 NC_005808.1 + 9992 0.7 0.148466
Target:  5'- -gCGUGGCgggGUCGaaagUGCCGCgCGCCCGg -3'
miRNA:   3'- uaGCGCCGg--UAGCa---ACGGCG-GCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 32315 0.7 0.150084
Target:  5'- cAUCGCcGCCAUCaagGCCggcgucccgacaaccGCCGCCCAg -3'
miRNA:   3'- -UAGCGcCGGUAGcaaCGG---------------CGGCGGGU- -5'
26706 5' -62.3 NC_005808.1 + 20180 0.7 0.152541
Target:  5'- cUUGCGGCU-UCGccUUGUCGUCGCCCu -3'
miRNA:   3'- uAGCGCCGGuAGC--AACGGCGGCGGGu -5'
26706 5' -62.3 NC_005808.1 + 3875 0.7 0.156717
Target:  5'- cGUCGCuguaGGCCG-CGcUGCCGUCGCCg- -3'
miRNA:   3'- -UAGCG----CCGGUaGCaACGGCGGCGGgu -5'
26706 5' -62.3 NC_005808.1 + 32357 0.69 0.160996
Target:  5'- gGUCGCuGCgGUCGccGCCgaggccccgGCCGCCCAg -3'
miRNA:   3'- -UAGCGcCGgUAGCaaCGG---------CGGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.