miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26707 3' -54.2 NC_005808.1 + 19241 0.66 0.744761
Target:  5'- cGCCacCGugUUcaucgGCGgCGAGGCCGUCGa -3'
miRNA:   3'- -CGGa-GCugGA-----UGUgGCUUCGGUAGCg -5'
26707 3' -54.2 NC_005808.1 + 5703 0.66 0.744761
Target:  5'- uCCUUGGCCUugucggucgGCACCuuGAGGauGUCGCa -3'
miRNA:   3'- cGGAGCUGGA---------UGUGG--CUUCggUAGCG- -5'
26707 3' -54.2 NC_005808.1 + 30569 0.66 0.744761
Target:  5'- cGCUgggcaaGACCU-CGCCGGccacGGCCG-CGCu -3'
miRNA:   3'- -CGGag----CUGGAuGUGGCU----UCGGUaGCG- -5'
26707 3' -54.2 NC_005808.1 + 38019 0.66 0.744761
Target:  5'- uCCUCG-CCUggcGCACCG-AGCag-CGCc -3'
miRNA:   3'- cGGAGCuGGA---UGUGGCuUCGguaGCG- -5'
26707 3' -54.2 NC_005808.1 + 17860 0.66 0.744761
Target:  5'- gGCCUCGucGCCcaggUAgGCCaGGGCCAgaUUGCa -3'
miRNA:   3'- -CGGAGC--UGG----AUgUGGcUUCGGU--AGCG- -5'
26707 3' -54.2 NC_005808.1 + 30900 0.66 0.744761
Target:  5'- cCCagcCGACaCUGCACCGGauacagaagGGCaucaAUCGCg -3'
miRNA:   3'- cGGa--GCUG-GAUGUGGCU---------UCGg---UAGCG- -5'
26707 3' -54.2 NC_005808.1 + 16179 0.66 0.744761
Target:  5'- cGCgUCGGaguuCACCGAcGCCA-CGCg -3'
miRNA:   3'- -CGgAGCUggauGUGGCUuCGGUaGCG- -5'
26707 3' -54.2 NC_005808.1 + 28826 0.66 0.742636
Target:  5'- cGCCgucgucggguugCGGCCggACuuGCCGAAGCUGUCccaGCg -3'
miRNA:   3'- -CGGa-----------GCUGGa-UG--UGGCUUCGGUAG---CG- -5'
26707 3' -54.2 NC_005808.1 + 14328 0.66 0.734089
Target:  5'- cGCCUUGGCUgaACugCcGGGCCugcugguUCGCg -3'
miRNA:   3'- -CGGAGCUGGa-UGugGcUUCGGu------AGCG- -5'
26707 3' -54.2 NC_005808.1 + 19388 0.66 0.734089
Target:  5'- gGCCgaGGCCgaauuCACCGAcgaGGCCgaccugcugcuGUCGCa -3'
miRNA:   3'- -CGGagCUGGau---GUGGCU---UCGG-----------UAGCG- -5'
26707 3' -54.2 NC_005808.1 + 29084 0.66 0.734089
Target:  5'- uCCUCGG---GCGCCGAGGUCAggcccgUGCg -3'
miRNA:   3'- cGGAGCUggaUGUGGCUUCGGUa-----GCG- -5'
26707 3' -54.2 NC_005808.1 + 31661 0.66 0.734089
Target:  5'- cGCUuggUgGGCCUACACCG--GCCAcaaGCa -3'
miRNA:   3'- -CGG---AgCUGGAUGUGGCuuCGGUag-CG- -5'
26707 3' -54.2 NC_005808.1 + 16810 0.66 0.734089
Target:  5'- aCCgagCGcGCCgcgcGCAUCGcGGCCAUCGUu -3'
miRNA:   3'- cGGa--GC-UGGa---UGUGGCuUCGGUAGCG- -5'
26707 3' -54.2 NC_005808.1 + 24736 0.66 0.734089
Target:  5'- gGCCcUGGCCUACcugggcgaCGAGGCCAcggUgGCg -3'
miRNA:   3'- -CGGaGCUGGAUGug------GCUUCGGU---AgCG- -5'
26707 3' -54.2 NC_005808.1 + 26717 0.66 0.734089
Target:  5'- gGCCUC-ACCUACGugcCCGAgcaacagaucGGCgCGUgGCa -3'
miRNA:   3'- -CGGAGcUGGAUGU---GGCU----------UCG-GUAgCG- -5'
26707 3' -54.2 NC_005808.1 + 34726 0.66 0.734089
Target:  5'- uCC-CGACC-AUcgGCCGAAGCCugaacCGCg -3'
miRNA:   3'- cGGaGCUGGaUG--UGGCUUCGGua---GCG- -5'
26707 3' -54.2 NC_005808.1 + 4864 0.66 0.734089
Target:  5'- aGCUUCcaauCCU-CGCCGGcgAGCCA-CGCa -3'
miRNA:   3'- -CGGAGcu--GGAuGUGGCU--UCGGUaGCG- -5'
26707 3' -54.2 NC_005808.1 + 19140 0.66 0.733016
Target:  5'- -gUUCGGCCcccACACCGucAGCCAgauggaugcguugUCGCu -3'
miRNA:   3'- cgGAGCUGGa--UGUGGCu-UCGGU-------------AGCG- -5'
26707 3' -54.2 NC_005808.1 + 33280 0.66 0.730866
Target:  5'- cGCCgcgcCGACgUGCGCCGccaggucgccgaggAAGUCAaugCGCa -3'
miRNA:   3'- -CGGa---GCUGgAUGUGGC--------------UUCGGUa--GCG- -5'
26707 3' -54.2 NC_005808.1 + 26469 0.66 0.727634
Target:  5'- gGCCgcaGuCCUACGUCGggGCCAccgacgugcagccggUCGUg -3'
miRNA:   3'- -CGGag-CuGGAUGUGGCuuCGGU---------------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.