miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26707 5' -58.1 NC_005808.1 + 4522 0.66 0.519442
Target:  5'- -cGCuuGAgCGCAUCGCAGACcacgaaGGUcuuGGGCu -3'
miRNA:   3'- gaCG--CUgGCGUAGCGUCUG------CCG---CUCG- -5'
26707 5' -58.1 NC_005808.1 + 2939 0.66 0.519442
Target:  5'- -gGCccacACCGCGUCGC--GCGGCacgucGAGCa -3'
miRNA:   3'- gaCGc---UGGCGUAGCGucUGCCG-----CUCG- -5'
26707 5' -58.1 NC_005808.1 + 38473 0.66 0.519442
Target:  5'- aUGCGccgggaagcaacGCUGCAgCGCAGGCuGGCGGa- -3'
miRNA:   3'- gACGC------------UGGCGUaGCGUCUG-CCGCUcg -5'
26707 5' -58.1 NC_005808.1 + 8964 0.66 0.519442
Target:  5'- -gGUGGCCGUGccggauUCGCAG-CGGUG-GCc -3'
miRNA:   3'- gaCGCUGGCGU------AGCGUCuGCCGCuCG- -5'
26707 5' -58.1 NC_005808.1 + 9955 0.66 0.519442
Target:  5'- -cGUGGacaaauCCGCAUUuuuaaGCAGgaaACGGUGAGCg -3'
miRNA:   3'- gaCGCU------GGCGUAG-----CGUC---UGCCGCUCG- -5'
26707 5' -58.1 NC_005808.1 + 39047 0.66 0.508991
Target:  5'- aUGCGGCgCGguUgGCGGgacugcGCGGUGuGCg -3'
miRNA:   3'- gACGCUG-GCguAgCGUC------UGCCGCuCG- -5'
26707 5' -58.1 NC_005808.1 + 4209 0.66 0.508991
Target:  5'- -cGCGAgCaCGUCGCGGcuuGCGGCuuGCg -3'
miRNA:   3'- gaCGCUgGcGUAGCGUC---UGCCGcuCG- -5'
26707 5' -58.1 NC_005808.1 + 18568 0.66 0.508991
Target:  5'- gUGgaGGCCGCGcUCGCGguGACGGCcuGGCc -3'
miRNA:   3'- gACg-CUGGCGU-AGCGU--CUGCCGc-UCG- -5'
26707 5' -58.1 NC_005808.1 + 31306 0.66 0.508991
Target:  5'- -gGCGACCGCGUgGUGGccCGGCuGGa -3'
miRNA:   3'- gaCGCUGGCGUAgCGUCu-GCCGcUCg -5'
26707 5' -58.1 NC_005808.1 + 16067 0.66 0.508991
Target:  5'- -cGUGGCCGCcgCGC--GCGGCGccGUa -3'
miRNA:   3'- gaCGCUGGCGuaGCGucUGCCGCu-CG- -5'
26707 5' -58.1 NC_005808.1 + 22277 0.66 0.508991
Target:  5'- aCUGaaggccaGcCCGCAUCGCAacCGGCcgccGAGCa -3'
miRNA:   3'- -GACg------CuGGCGUAGCGUcuGCCG----CUCG- -5'
26707 5' -58.1 NC_005808.1 + 6176 0.66 0.508991
Target:  5'- -aGCGcaggccggucuuGCCGCAgcguUUGCAgguGACGGCGcGCg -3'
miRNA:   3'- gaCGC------------UGGCGU----AGCGU---CUGCCGCuCG- -5'
26707 5' -58.1 NC_005808.1 + 31841 0.66 0.508991
Target:  5'- aCUGCgGGCCGaagucgagCGCGcccuUGGCGAGCa -3'
miRNA:   3'- -GACG-CUGGCgua-----GCGUcu--GCCGCUCG- -5'
26707 5' -58.1 NC_005808.1 + 171 0.66 0.49863
Target:  5'- -aGCuGCCGCG-CGCAGAauGCcGGCg -3'
miRNA:   3'- gaCGcUGGCGUaGCGUCUgcCGcUCG- -5'
26707 5' -58.1 NC_005808.1 + 13648 0.66 0.49863
Target:  5'- aUGUcGCUGCAUCaugaguucgaugGCAG-CGGCGAGg -3'
miRNA:   3'- gACGcUGGCGUAG------------CGUCuGCCGCUCg -5'
26707 5' -58.1 NC_005808.1 + 41451 0.66 0.49863
Target:  5'- -cGUGACCGCcgcCGUAG-CG-CGAGCu -3'
miRNA:   3'- gaCGCUGGCGua-GCGUCuGCcGCUCG- -5'
26707 5' -58.1 NC_005808.1 + 2390 0.66 0.49863
Target:  5'- -cGCGugCGUAcccUUGUcaGGGCGGCaAGCg -3'
miRNA:   3'- gaCGCugGCGU---AGCG--UCUGCCGcUCG- -5'
26707 5' -58.1 NC_005808.1 + 39768 0.66 0.49863
Target:  5'- -gGCG-CCGCugCGCGuGGCcGCGAGCa -3'
miRNA:   3'- gaCGCuGGCGuaGCGU-CUGcCGCUCG- -5'
26707 5' -58.1 NC_005808.1 + 468 0.66 0.49863
Target:  5'- uUGCGGgCGCuGUCGCGGucggaugccuCGGC-AGCa -3'
miRNA:   3'- gACGCUgGCG-UAGCGUCu---------GCCGcUCG- -5'
26707 5' -58.1 NC_005808.1 + 13543 0.66 0.49863
Target:  5'- aCUGuCGGCCGCcugacUCGguGcccACGGCGAuGUu -3'
miRNA:   3'- -GAC-GCUGGCGu----AGCguC---UGCCGCU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.