miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26707 5' -58.1 NC_005808.1 + 11494 0.66 0.492459
Target:  5'- cCUGCGAcaCCGCAaagggcagcgccugCGCuGGCGugaggcccuGCGAGCg -3'
miRNA:   3'- -GACGCU--GGCGUa-------------GCGuCUGC---------CGCUCG- -5'
26707 5' -58.1 NC_005808.1 + 38721 0.66 0.478198
Target:  5'- -gGCGACgGCAgCGCGgccuacagcGACGGCGccuGGUa -3'
miRNA:   3'- gaCGCUGgCGUaGCGU---------CUGCCGC---UCG- -5'
26707 5' -58.1 NC_005808.1 + 796 0.66 0.478198
Target:  5'- gCUGCGcaAUCGcCGUCaGCAGGUGGCuGGGCu -3'
miRNA:   3'- -GACGC--UGGC-GUAG-CGUCUGCCG-CUCG- -5'
26707 5' -58.1 NC_005808.1 + 5137 0.66 0.468138
Target:  5'- aCUGCaACgUGCcgCGCAGGCGGCcgucGCu -3'
miRNA:   3'- -GACGcUG-GCGuaGCGUCUGCCGcu--CG- -5'
26707 5' -58.1 NC_005808.1 + 25595 0.66 0.468138
Target:  5'- uCUGCGGCC-CAg-GCAGuggcaaccACGGCGGcGCg -3'
miRNA:   3'- -GACGCUGGcGUagCGUC--------UGCCGCU-CG- -5'
26707 5' -58.1 NC_005808.1 + 14374 0.66 0.468138
Target:  5'- -gGCGGgggcauCCGCGcCGCGGAacguaGGCGuAGCg -3'
miRNA:   3'- gaCGCU------GGCGUaGCGUCUg----CCGC-UCG- -5'
26707 5' -58.1 NC_005808.1 + 31438 0.66 0.468138
Target:  5'- -aGCG-CaCGCAacgugCGCAGGCGGCccAGCa -3'
miRNA:   3'- gaCGCuG-GCGUa----GCGUCUGCCGc-UCG- -5'
26707 5' -58.1 NC_005808.1 + 8599 0.66 0.468138
Target:  5'- -gGCGACCGU---GgGGAUGGCGuaGGCg -3'
miRNA:   3'- gaCGCUGGCGuagCgUCUGCCGC--UCG- -5'
26707 5' -58.1 NC_005808.1 + 38729 0.67 0.458187
Target:  5'- -cGuCGAgCGCGUCaggaaGCuGGGCGGCGAGg -3'
miRNA:   3'- gaC-GCUgGCGUAG-----CG-UCUGCCGCUCg -5'
26707 5' -58.1 NC_005808.1 + 8428 0.67 0.457198
Target:  5'- -cGCGGggGCGUCGCGGAacauCGGCGcgaugucGGCg -3'
miRNA:   3'- gaCGCUggCGUAGCGUCU----GCCGC-------UCG- -5'
26707 5' -58.1 NC_005808.1 + 11393 0.67 0.44835
Target:  5'- -gGCGACCugaugggccaGgGUCuugaGCAG-CGGCGAGCc -3'
miRNA:   3'- gaCGCUGG----------CgUAG----CGUCuGCCGCUCG- -5'
26707 5' -58.1 NC_005808.1 + 406 0.67 0.44835
Target:  5'- -cGCGACUGUugaGCAGcACGucGCGGGCc -3'
miRNA:   3'- gaCGCUGGCGuagCGUC-UGC--CGCUCG- -5'
26707 5' -58.1 NC_005808.1 + 41599 0.67 0.44835
Target:  5'- --cCGGCCaGUggCGCGGGCaGCGGGCu -3'
miRNA:   3'- gacGCUGG-CGuaGCGUCUGcCGCUCG- -5'
26707 5' -58.1 NC_005808.1 + 16423 0.67 0.44835
Target:  5'- --aCGGCCGCGggguaaUCGCcGGCGGCGuugaacacGGCg -3'
miRNA:   3'- gacGCUGGCGU------AGCGuCUGCCGC--------UCG- -5'
26707 5' -58.1 NC_005808.1 + 1077 0.67 0.438632
Target:  5'- gUGCGACCcgGCG-CGCGuacuucauguuGGCGGCGguaGGCg -3'
miRNA:   3'- gACGCUGG--CGUaGCGU-----------CUGCCGC---UCG- -5'
26707 5' -58.1 NC_005808.1 + 19159 0.67 0.429035
Target:  5'- -cGCGAaccauCCGCAUCcCGGcCGGCGucGCa -3'
miRNA:   3'- gaCGCU-----GGCGUAGcGUCuGCCGCu-CG- -5'
26707 5' -58.1 NC_005808.1 + 14768 0.67 0.429035
Target:  5'- -cGCGGCCgGCGccacCGCGGGCaGCGcGCg -3'
miRNA:   3'- gaCGCUGG-CGUa---GCGUCUGcCGCuCG- -5'
26707 5' -58.1 NC_005808.1 + 11838 0.67 0.429035
Target:  5'- --cCGGCCGCGcCGCGGuuGGCcuGGGCg -3'
miRNA:   3'- gacGCUGGCGUaGCGUCugCCG--CUCG- -5'
26707 5' -58.1 NC_005808.1 + 21807 0.67 0.429035
Target:  5'- -gGCGgacACCGgcaGUUGCAG-CGGCGGGUu -3'
miRNA:   3'- gaCGC---UGGCg--UAGCGUCuGCCGCUCG- -5'
26707 5' -58.1 NC_005808.1 + 9878 0.67 0.429035
Target:  5'- -gGCGucagcccuccAUCGCcugAUUGCAcGCGGCGAGCa -3'
miRNA:   3'- gaCGC----------UGGCG---UAGCGUcUGCCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.