miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26708 5' -63.7 NC_005808.1 + 25602 0.66 0.239436
Target:  5'- cCCAggcagUGGcaaccacGGCGGCGCGGUC-GCCAGc -3'
miRNA:   3'- aGGUa----GCC-------CCGCCGCGUCGGaCGGUU- -5'
26708 5' -63.7 NC_005808.1 + 14885 0.66 0.233383
Target:  5'- gUCCAUgacCGGcGGCGagccgcugccggcGCGCGGCCUGUa-- -3'
miRNA:   3'- -AGGUA---GCC-CCGC-------------CGCGUCGGACGguu -5'
26708 5' -63.7 NC_005808.1 + 28391 0.66 0.216556
Target:  5'- uUCCAguUCGacgccGGCGGCGCGGC--GCCAGu -3'
miRNA:   3'- -AGGU--AGCc----CCGCCGCGUCGgaCGGUU- -5'
26708 5' -63.7 NC_005808.1 + 18448 0.66 0.210999
Target:  5'- gCCGUCGaGGCGcugggccaggcGCGCAGCCgGCUGGa -3'
miRNA:   3'- aGGUAGCcCCGC-----------CGCGUCGGaCGGUU- -5'
26708 5' -63.7 NC_005808.1 + 39144 0.67 0.200253
Target:  5'- -aCAUCGGGGC-GCGCGGCguCUGUg-- -3'
miRNA:   3'- agGUAGCCCCGcCGCGUCG--GACGguu -5'
26708 5' -63.7 NC_005808.1 + 26481 0.67 0.185028
Target:  5'- -aCGUCGGGGCcaccgacGUGCAGCCgGUCGu -3'
miRNA:   3'- agGUAGCCCCGc------CGCGUCGGaCGGUu -5'
26708 5' -63.7 NC_005808.1 + 12004 0.67 0.180184
Target:  5'- uUCCAcgUCGGccaGCaGCGCGGCCgugGCCGg -3'
miRNA:   3'- -AGGU--AGCCc--CGcCGCGUCGGa--CGGUu -5'
26708 5' -63.7 NC_005808.1 + 18063 0.67 0.175454
Target:  5'- aCCGgcgCGGGGUGcGUGCugGGCC-GCCGAa -3'
miRNA:   3'- aGGUa--GCCCCGC-CGCG--UCGGaCGGUU- -5'
26708 5' -63.7 NC_005808.1 + 24297 0.68 0.170834
Target:  5'- -aCGUgGGGGCGGUgaggucggcgaGCAGCCgcggGUCAGg -3'
miRNA:   3'- agGUAgCCCCGCCG-----------CGUCGGa---CGGUU- -5'
26708 5' -63.7 NC_005808.1 + 16897 0.68 0.170834
Target:  5'- gCCG-CGGGGCuGGUaugaGCAGCgUUGCCGAa -3'
miRNA:   3'- aGGUaGCCCCG-CCG----CGUCG-GACGGUU- -5'
26708 5' -63.7 NC_005808.1 + 39700 0.68 0.166323
Target:  5'- -aCAUCGGGGC-GCGCGGCgucugUGCCc- -3'
miRNA:   3'- agGUAGCCCCGcCGCGUCGg----ACGGuu -5'
26708 5' -63.7 NC_005808.1 + 28830 0.69 0.145338
Target:  5'- gUCGUCGGGuuGCGGC-CGGaCUUGCCGAa -3'
miRNA:   3'- aGGUAGCCC--CGCCGcGUC-GGACGGUU- -5'
26708 5' -63.7 NC_005808.1 + 5623 0.7 0.116748
Target:  5'- uUUCGcgCGuGGcGCGGCGCAGCUUGCUg- -3'
miRNA:   3'- -AGGUa-GC-CC-CGCCGCGUCGGACGGuu -5'
26708 5' -63.7 NC_005808.1 + 7686 0.71 0.096122
Target:  5'- gUCGUCGGgcuugaccucGGCGGC-CGGCUUGCCGAu -3'
miRNA:   3'- aGGUAGCC----------CCGCCGcGUCGGACGGUU- -5'
26708 5' -63.7 NC_005808.1 + 363 0.72 0.074641
Target:  5'- aCCAUCcGGGUGuGCuuGGCCUGCCGAu -3'
miRNA:   3'- aGGUAGcCCCGC-CGcgUCGGACGGUU- -5'
26708 5' -63.7 NC_005808.1 + 28134 0.73 0.064779
Target:  5'- gCCugGUC-GGGCGGCaGCAGCUUGCCGGu -3'
miRNA:   3'- aGG--UAGcCCCGCCG-CGUCGGACGGUU- -5'
26708 5' -63.7 NC_005808.1 + 15769 1.06 0.000153
Target:  5'- cUCCAUCGGGGCGGCGCAGCCUGCCAAa -3'
miRNA:   3'- -AGGUAGCCCCGCCGCGUCGGACGGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.