miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26709 3' -68.6 NC_005808.1 + 15160 1.1 0.000034
Target:  5'- gCGCCAGGGCCUGCGGCCGCCGGGCGCg -3'
miRNA:   3'- -GCGGUCCCGGACGCCGGCGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 11586 0.87 0.00295
Target:  5'- cCGcCCAGGGCCgccgGCuGGCCGCCGGGCaGCa -3'
miRNA:   3'- -GC-GGUCCCGGa---CG-CCGGCGGCCCG-CG- -5'
26709 3' -68.6 NC_005808.1 + 6366 0.83 0.00625
Target:  5'- gGCCGGGGCgCUGgguuacaccagguCGGCCGCCGcGGCGCc -3'
miRNA:   3'- gCGGUCCCG-GAC-------------GCCGGCGGC-CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 11405 0.77 0.017061
Target:  5'- gGCCAGGGUCUugagcaGCGGCgaGCCGGcGUGCa -3'
miRNA:   3'- gCGGUCCCGGA------CGCCGg-CGGCC-CGCG- -5'
26709 3' -68.6 NC_005808.1 + 27500 0.77 0.018033
Target:  5'- uGCCGGcGGCCU-CGGCCGCCagcuucucGGCGCg -3'
miRNA:   3'- gCGGUC-CCGGAcGCCGGCGGc-------CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 14421 0.77 0.019596
Target:  5'- uCGCCAGGcgcGCCUGCGGCaccguGuuGGGCGa -3'
miRNA:   3'- -GCGGUCC---CGGACGCCGg----CggCCCGCg -5'
26709 3' -68.6 NC_005808.1 + 6238 0.75 0.025134
Target:  5'- gGCCAGGGCCUGCa--CGCCGguaacGGUGCg -3'
miRNA:   3'- gCGGUCCCGGACGccgGCGGC-----CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 18067 0.73 0.036956
Target:  5'- gCGCgGGGuGCgUGCugGGCCGCCGaagccGGCGCg -3'
miRNA:   3'- -GCGgUCC-CGgACG--CCGGCGGC-----CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 8852 0.73 0.03788
Target:  5'- gGCCAGcgcguuGGCCU-CGGUCGCCacgaagcGGGCGCg -3'
miRNA:   3'- gCGGUC------CCGGAcGCCGGCGG-------CCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 1707 0.73 0.037984
Target:  5'- uCGCCGuGGGCCgGCGuGCCGgCgaGGGCGUc -3'
miRNA:   3'- -GCGGU-CCCGGaCGC-CGGCgG--CCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 12501 0.73 0.038933
Target:  5'- uCGCCugggacaAGGGCC-GUGGCgC-CCGGGCGCc -3'
miRNA:   3'- -GCGG-------UCCCGGaCGCCG-GcGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 25722 0.73 0.039687
Target:  5'- gCGgCGGGGUCgucguccucaccgGCGGCagcaCGCUGGGCGCg -3'
miRNA:   3'- -GCgGUCCCGGa------------CGCCG----GCGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 10235 0.73 0.041126
Target:  5'- gGCCGGGGCCUcgGCGGCgacCGCagcgaccUGGGCGg -3'
miRNA:   3'- gCGGUCCCGGA--CGCCG---GCG-------GCCCGCg -5'
26709 3' -68.6 NC_005808.1 + 38897 0.72 0.04728
Target:  5'- gCGCCgcauGGGGCa-GCGcGUCGCCGGGUGg -3'
miRNA:   3'- -GCGG----UCCCGgaCGC-CGGCGGCCCGCg -5'
26709 3' -68.6 NC_005808.1 + 9458 0.72 0.04728
Target:  5'- aCGCCgAGGGCCUGauaGGCaGCgaauucuuCGGGCGUc -3'
miRNA:   3'- -GCGG-UCCCGGACg--CCGgCG--------GCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 16123 0.72 0.048455
Target:  5'- aCGUCGGuGGCCccgacguaggacUGCGGCCGCacgcugaugguggUGGGCGUu -3'
miRNA:   3'- -GCGGUC-CCGG------------ACGCCGGCG-------------GCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 41280 0.72 0.048588
Target:  5'- gCGCUugucGGCCUgGUGGCCGUCgcccuGGGCGCg -3'
miRNA:   3'- -GCGGuc--CCGGA-CGCCGGCGG-----CCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 21453 0.72 0.049931
Target:  5'- -aCCAGGGCgCggacacgGCGGCCaaGCUGGGCaGCg -3'
miRNA:   3'- gcGGUCCCG-Ga------CGCCGG--CGGCCCG-CG- -5'
26709 3' -68.6 NC_005808.1 + 14833 0.72 0.05131
Target:  5'- uCGcCCAGGucgauGCCguugGCGGCCagcgccgcacGCUGGGCGCc -3'
miRNA:   3'- -GC-GGUCC-----CGGa---CGCCGG----------CGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 17918 0.71 0.054181
Target:  5'- aGCCuGGGCgUggacGUGGcCCGCggCGGGCGCg -3'
miRNA:   3'- gCGGuCCCGgA----CGCC-GGCG--GCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.