miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26709 3' -68.6 NC_005808.1 + 14795 0.71 0.058781
Target:  5'- gCGCgAGGacGUgCUGCGGCUGCgCGGcGCGCg -3'
miRNA:   3'- -GCGgUCC--CG-GACGCCGGCG-GCC-CGCG- -5'
26709 3' -68.6 NC_005808.1 + 36246 0.71 0.058781
Target:  5'- gCGCCccGGCCUuCGG--GCCGGGCGCu -3'
miRNA:   3'- -GCGGucCCGGAcGCCggCGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 19037 0.71 0.060397
Target:  5'- aGCCcuGGUa-GCGGCCGCCGGcgGCGUc -3'
miRNA:   3'- gCGGucCCGgaCGCCGGCGGCC--CGCG- -5'
26709 3' -68.6 NC_005808.1 + 22160 0.71 0.060397
Target:  5'- -aCgAGGGCCUGCGGCUaCU-GGCGCa -3'
miRNA:   3'- gcGgUCCCGGACGCCGGcGGcCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 16042 0.71 0.062055
Target:  5'- uGCCAGuuguaGGCCaguucgcgcacGUGGCCGCCGcGCGCg -3'
miRNA:   3'- gCGGUC-----CCGGa----------CGCCGGCGGCcCGCG- -5'
26709 3' -68.6 NC_005808.1 + 6591 0.7 0.063758
Target:  5'- gGCCAgGGGgCUGCGGUCuuuGUcgaugaccagCGGGCGCg -3'
miRNA:   3'- gCGGU-CCCgGACGCCGG---CG----------GCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 13447 0.7 0.065506
Target:  5'- cCGCCA--GCUUgGCGGCC-UCGGGCGCg -3'
miRNA:   3'- -GCGGUccCGGA-CGCCGGcGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 14890 0.7 0.065506
Target:  5'- uGaCCGGcGGCgaGCcGCUGCCGGcGCGCg -3'
miRNA:   3'- gC-GGUC-CCGgaCGcCGGCGGCC-CGCG- -5'
26709 3' -68.6 NC_005808.1 + 27856 0.7 0.065683
Target:  5'- gCGCCAaugcugcgcguacuGCCUGgGGCUaCCGGGCGCa -3'
miRNA:   3'- -GCGGUcc------------CGGACgCCGGcGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 28524 0.7 0.068031
Target:  5'- uGCCGGcgcugcuuguugaacGGCacgaccuUGCGGCCGCCGgccaucgcGGCGCg -3'
miRNA:   3'- gCGGUC---------------CCGg------ACGCCGGCGGC--------CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 7142 0.7 0.069141
Target:  5'- aGUCGucGgCUGCGGCCuggaugaccaggGCCGGGCGCu -3'
miRNA:   3'- gCGGUccCgGACGCCGG------------CGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 10498 0.7 0.071031
Target:  5'- gGCCAGGGCgUugagcaacGCGGCCGUguuggCGGG-GCc -3'
miRNA:   3'- gCGGUCCCGgA--------CGCCGGCG-----GCCCgCG- -5'
26709 3' -68.6 NC_005808.1 + 42080 0.7 0.071031
Target:  5'- gGCCGaacagaaccGCCUGCaaGCCGCCGcGGCGCa -3'
miRNA:   3'- gCGGUcc-------CGGACGc-CGGCGGC-CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 2642 0.7 0.072774
Target:  5'- aGCCaccacuuugcggaAGGGCCaGCGGUCGCCcaGGUGUu -3'
miRNA:   3'- gCGG-------------UCCCGGaCGCCGGCGGc-CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 31006 0.7 0.07297
Target:  5'- uGcCCGGcGGCCagccgGCGGCC-CUGGGCGg -3'
miRNA:   3'- gC-GGUC-CCGGa----CGCCGGcGGCCCGCg -5'
26709 3' -68.6 NC_005808.1 + 37438 0.7 0.07297
Target:  5'- uCGCCaAGGGCgUGagcagcgaCGGCCGCCu-GCGCg -3'
miRNA:   3'- -GCGG-UCCCGgAC--------GCCGGCGGccCGCG- -5'
26709 3' -68.6 NC_005808.1 + 11294 0.7 0.07496
Target:  5'- aGCC-GGGCCaccacGCGGUCGCCaGGCu- -3'
miRNA:   3'- gCGGuCCCGGa----CGCCGGCGGcCCGcg -5'
26709 3' -68.6 NC_005808.1 + 15099 0.69 0.076796
Target:  5'- aGCUGGcGGCCga-GGCCGCCGGcauccucGCGUg -3'
miRNA:   3'- gCGGUC-CCGGacgCCGGCGGCC-------CGCG- -5'
26709 3' -68.6 NC_005808.1 + 432 0.69 0.077002
Target:  5'- gGCCGuaccuugucguuGGGCUgcugcGCGGCCaGCuugCGGGCGCu -3'
miRNA:   3'- gCGGU------------CCCGGa----CGCCGG-CG---GCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 13156 0.69 0.077002
Target:  5'- gCGCCucgaugucGGCCagUGuCGGCCGCgcUGGGCGCc -3'
miRNA:   3'- -GCGGuc------CCGG--AC-GCCGGCG--GCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.