miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26709 3' -68.6 NC_005808.1 + 2726 0.67 0.130808
Target:  5'- gGCCGGacgcuugagcgcGGCCcgGC-GCUGCuCGGGCGUg -3'
miRNA:   3'- gCGGUC------------CCGGa-CGcCGGCG-GCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 13820 0.67 0.12744
Target:  5'- -aCCAGGGCaaGCGcGaCGCCGuGCGCg -3'
miRNA:   3'- gcGGUCCCGgaCGC-CgGCGGCcCGCG- -5'
26709 3' -68.6 NC_005808.1 + 33326 0.67 0.126116
Target:  5'- aGCCGguguaccGGGCCgaccgcuuccUGCgguauggugaacugGaacuGCCGCCGGGCGCg -3'
miRNA:   3'- gCGGU-------CCCGG----------ACG--------------C----CGGCGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 25779 0.67 0.124153
Target:  5'- gCGCCGcGugaaCUGC-GCCGCCuGGGCGCg -3'
miRNA:   3'- -GCGGUcCcg--GACGcCGGCGG-CCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 19482 0.67 0.124153
Target:  5'- gCGCCAGGuGCCgguggGCaGGCCGCUGcGaaccguggucuuGUGCu -3'
miRNA:   3'- -GCGGUCC-CGGa----CG-CCGGCGGC-C------------CGCG- -5'
26709 3' -68.6 NC_005808.1 + 39512 0.67 0.124153
Target:  5'- uGCCgcgugucgaAGGGCaugggUGCGGCU--CGGGCGCu -3'
miRNA:   3'- gCGG---------UCCCGg----ACGCCGGcgGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 1036 0.67 0.123829
Target:  5'- gGCCAcGGCCgGCGGCagcauguCGCCGcgaaccGGCGUc -3'
miRNA:   3'- gCGGUcCCGGaCGCCG-------GCGGC------CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 7599 0.67 0.122219
Target:  5'- gGUCAGGGUCUGUccguCUGCCguggugauggucaggGGGCGCg -3'
miRNA:   3'- gCGGUCCCGGACGcc--GGCGG---------------CCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 37794 0.67 0.120945
Target:  5'- gGCCAGcaaucccgcaGcGCCaGcCGGCgUGCUGGGCGCa -3'
miRNA:   3'- gCGGUC----------C-CGGaC-GCCG-GCGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 4339 0.67 0.120945
Target:  5'- uGCCAGccuugaugcuGGCCguUGC-GuuGCCGGuGCGCg -3'
miRNA:   3'- gCGGUC----------CCGG--ACGcCggCGGCC-CGCG- -5'
26709 3' -68.6 NC_005808.1 + 24609 0.67 0.120945
Target:  5'- uGCCGGGGUaggucaGCGGCaCGUCGaaccacauGGCGUg -3'
miRNA:   3'- gCGGUCCCGga----CGCCG-GCGGC--------CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 27766 0.67 0.120629
Target:  5'- cCGCCAacggcaucgaccuGGGCgaagGCaGcGCCGCCGaGGUGCa -3'
miRNA:   3'- -GCGGU-------------CCCGga--CG-C-CGGCGGC-CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 5898 0.67 0.117814
Target:  5'- uCGCCAGcguGGUgaGUGuGCCGCCGGGa-- -3'
miRNA:   3'- -GCGGUC---CCGgaCGC-CGGCGGCCCgcg -5'
26709 3' -68.6 NC_005808.1 + 10328 0.67 0.117814
Target:  5'- uCGCCA-GGCCguaGCcGUCGCUGcGGCGUg -3'
miRNA:   3'- -GCGGUcCCGGa--CGcCGGCGGC-CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 1596 0.67 0.117505
Target:  5'- uGCCacacGGGGUCgaggGuCGGCCcuucguaGUCGGGCGUg -3'
miRNA:   3'- gCGG----UCCCGGa---C-GCCGG-------CGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 14137 0.67 0.114759
Target:  5'- gGCCAGcGGCUUGCcuuccGGCCGUUccaGCGCg -3'
miRNA:   3'- gCGGUC-CCGGACG-----CCGGCGGcc-CGCG- -5'
26709 3' -68.6 NC_005808.1 + 38551 0.67 0.111778
Target:  5'- gGCCGcuGGCCUGCcGCuCGCCGcGGCcgGCu -3'
miRNA:   3'- gCGGUc-CCGGACGcCG-GCGGC-CCG--CG- -5'
26709 3' -68.6 NC_005808.1 + 27066 0.67 0.111778
Target:  5'- uGCuCAGGGCgucagcccCUGCuGGUCGaaaaccuaCCGGGUGCa -3'
miRNA:   3'- gCG-GUCCCG--------GACG-CCGGC--------GGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 41222 0.67 0.111778
Target:  5'- cCGCgAGGaCUUGCgcuucGGUCGCCGGauGCGCa -3'
miRNA:   3'- -GCGgUCCcGGACG-----CCGGCGGCC--CGCG- -5'
26709 3' -68.6 NC_005808.1 + 25586 0.67 0.110898
Target:  5'- aCGCCGcGGUCUGCGGCCcagGCaguggcaaccacggcGGCGCg -3'
miRNA:   3'- -GCGGUcCCGGACGCCGG---CGgc-------------CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.