miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26709 3' -68.6 NC_005808.1 + 38090 0.68 0.108869
Target:  5'- gCGCUcaAGcGCCUGUGG-CGCCGcGCGCa -3'
miRNA:   3'- -GCGG--UCcCGGACGCCgGCGGCcCGCG- -5'
26709 3' -68.6 NC_005808.1 + 6296 0.68 0.108869
Target:  5'- gCGCCGGGGCUuaucuccggUGCGuGCaagaCGcGGCGCg -3'
miRNA:   3'- -GCGGUCCCGG---------ACGC-CGgcg-GC-CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 14342 0.68 0.10801
Target:  5'- uGCC-GGGCCUGCuGGuUCGCgguguccuggaaggCGGGgGCa -3'
miRNA:   3'- gCGGuCCCGGACG-CC-GGCG--------------GCCCgCG- -5'
26709 3' -68.6 NC_005808.1 + 4548 0.68 0.106032
Target:  5'- gGUCuuGGGCUUGaGGCCgaagucGCCGaGGCGCu -3'
miRNA:   3'- gCGGu-CCCGGACgCCGG------CGGC-CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 27422 0.68 0.106032
Target:  5'- gCGCCuGGcgcaccgcGCCcgGCGGCCGCaggcccuGGCGCu -3'
miRNA:   3'- -GCGGuCC--------CGGa-CGCCGGCGgc-----CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 17268 0.68 0.105194
Target:  5'- aGCCGGGGauaUUGCcguccacgaagccgGcGCCG-CGGGCGCg -3'
miRNA:   3'- gCGGUCCCg--GACG--------------C-CGGCgGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 30180 0.68 0.103264
Target:  5'- gCGCCAGucggugaaGGCCaUGaaguaGCCGCCGGGCu- -3'
miRNA:   3'- -GCGGUC--------CCGG-ACgc---CGGCGGCCCGcg -5'
26709 3' -68.6 NC_005808.1 + 29745 0.68 0.100564
Target:  5'- aCGCCGuagaacucGGCCU-CGGCUGCUGccaGGCGCg -3'
miRNA:   3'- -GCGGUc-------CCGGAcGCCGGCGGC---CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 32917 0.68 0.097931
Target:  5'- gGCCAcGGCCUgcacgGCGGCUguucgGCCaGGGCGa -3'
miRNA:   3'- gCGGUcCCGGA-----CGCCGG-----CGG-CCCGCg -5'
26709 3' -68.6 NC_005808.1 + 19477 0.68 0.097931
Target:  5'- uGUCAGGaGCCguuaccGCuGUCGCCguGGGCGCc -3'
miRNA:   3'- gCGGUCC-CGGa-----CGcCGGCGG--CCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 28658 0.68 0.095363
Target:  5'- uGCCAgaucGGuGCCgGCGGCCucGCCagcgcGGCGCg -3'
miRNA:   3'- gCGGU----CC-CGGaCGCCGG--CGGc----CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 8296 0.68 0.095363
Target:  5'- uGCCGGGGCagUGCaGCCaGC-GGuGCGCg -3'
miRNA:   3'- gCGGUCCCGg-ACGcCGG-CGgCC-CGCG- -5'
26709 3' -68.6 NC_005808.1 + 32617 0.68 0.09212
Target:  5'- gCGUCaAGGGCCgcgacgccGCGGUCGCUGuccugucgaaguucGGCGCc -3'
miRNA:   3'- -GCGG-UCCCGGa-------CGCCGGCGGC--------------CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 41110 0.68 0.09212
Target:  5'- cCGaCCAGcacugcgauaccccGGCCUGCcaggaGGCCGCCGaccGCGCc -3'
miRNA:   3'- -GC-GGUC--------------CCGGACG-----CCGGCGGCc--CGCG- -5'
26709 3' -68.6 NC_005808.1 + 14044 0.69 0.090417
Target:  5'- gCGCCGcgauGGCCgGCGGCCGCaaGGuCGUg -3'
miRNA:   3'- -GCGGUc---CCGGaCGCCGGCGgcCC-GCG- -5'
26709 3' -68.6 NC_005808.1 + 24192 0.69 0.090417
Target:  5'- aCGCCAccuucGCCgacGUGGCCGCCaccGGCGCc -3'
miRNA:   3'- -GCGGUcc---CGGa--CGCCGGCGGc--CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 671 0.69 0.088037
Target:  5'- aGCCAccaGGCCgccuacgGCGGCgccgGCCGGGcCGCc -3'
miRNA:   3'- gCGGUc--CCGGa------CGCCGg---CGGCCC-GCG- -5'
26709 3' -68.6 NC_005808.1 + 2823 0.69 0.081248
Target:  5'- gGCCAGGuGCUcGCGGCCacGCgcaGcGGCGCc -3'
miRNA:   3'- gCGGUCC-CGGaCGCCGG--CGg--C-CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 29591 0.69 0.079951
Target:  5'- gCGcCCAGGcGC--GCGGUuugccaguuguccagCGCCGGGCGCu -3'
miRNA:   3'- -GC-GGUCC-CGgaCGCCG---------------GCGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 13156 0.69 0.077002
Target:  5'- gCGCCucgaugucGGCCagUGuCGGCCGCgcUGGGCGCc -3'
miRNA:   3'- -GCGGuc------CCGG--AC-GCCGGCG--GCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.