Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26709 | 3' | -68.6 | NC_005808.1 | + | 8296 | 0.68 | 0.095363 |
Target: 5'- uGCCGGGGCagUGCaGCCaGC-GGuGCGCg -3' miRNA: 3'- gCGGUCCCGg-ACGcCGG-CGgCC-CGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 8414 | 0.66 | 0.156764 |
Target: 5'- gGCCAGGGCCgUGCgcuugucuacGGCCuugaggcuuugGCCcuuGCGCa -3' miRNA: 3'- gCGGUCCCGG-ACG----------CCGG-----------CGGcc-CGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 8852 | 0.73 | 0.03788 |
Target: 5'- gGCCAGcgcguuGGCCU-CGGUCGCCacgaagcGGGCGCg -3' miRNA: 3'- gCGGUC------CCGGAcGCCGGCGG-------CCCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 9382 | 0.66 | 0.145113 |
Target: 5'- aGCCAGcgguGGCCgugccgcgauagccaGCGGUgGCCgugccgaGGGCGCc -3' miRNA: 3'- gCGGUC----CCGGa--------------CGCCGgCGG-------CCCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 9458 | 0.72 | 0.04728 |
Target: 5'- aCGCCgAGGGCCUGauaGGCaGCgaauucuuCGGGCGUc -3' miRNA: 3'- -GCGG-UCCCGGACg--CCGgCG--------GCCCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 10235 | 0.73 | 0.041126 |
Target: 5'- gGCCGGGGCCUcgGCGGCgacCGCagcgaccUGGGCGg -3' miRNA: 3'- gCGGUCCCGGA--CGCCG---GCG-------GCCCGCg -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 10328 | 0.67 | 0.117814 |
Target: 5'- uCGCCA-GGCCguaGCcGUCGCUGcGGCGUg -3' miRNA: 3'- -GCGGUcCCGGa--CGcCGGCGGC-CCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 10498 | 0.7 | 0.071031 |
Target: 5'- gGCCAGGGCgUugagcaacGCGGCCGUguuggCGGG-GCc -3' miRNA: 3'- gCGGUCCCGgA--------CGCCGGCG-----GCCCgCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 10927 | 0.66 | 0.152397 |
Target: 5'- cCGCCgguuugcAGGGCCUcgggcaguugcGCGGCgacaGCCGGGg-- -3' miRNA: 3'- -GCGG-------UCCCGGA-----------CGCCGg---CGGCCCgcg -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 11294 | 0.7 | 0.07496 |
Target: 5'- aGCC-GGGCCaccacGCGGUCGCCaGGCu- -3' miRNA: 3'- gCGGuCCCGGa----CGCCGGCGGcCCGcg -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 11405 | 0.77 | 0.017061 |
Target: 5'- gGCCAGGGUCUugagcaGCGGCgaGCCGGcGUGCa -3' miRNA: 3'- gCGGUCCCGGA------CGCCGg-CGGCC-CGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 11586 | 0.87 | 0.00295 |
Target: 5'- cCGcCCAGGGCCgccgGCuGGCCGCCGGGCaGCa -3' miRNA: 3'- -GC-GGUCCCGGa---CG-CCGGCGGCCCG-CG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 12501 | 0.73 | 0.038933 |
Target: 5'- uCGCCugggacaAGGGCC-GUGGCgC-CCGGGCGCc -3' miRNA: 3'- -GCGG-------UCCCGGaCGCCG-GcGGCCCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 13156 | 0.69 | 0.077002 |
Target: 5'- gCGCCucgaugucGGCCagUGuCGGCCGCgcUGGGCGCc -3' miRNA: 3'- -GCGGuc------CCGG--AC-GCCGGCG--GCCCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 13223 | 0.66 | 0.137433 |
Target: 5'- gCGCCgaguccgAGGGCUgggGCaaGGCCaCCGGcGCGUg -3' miRNA: 3'- -GCGG-------UCCCGGa--CG--CCGGcGGCC-CGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 13305 | 0.66 | 0.138866 |
Target: 5'- gCGCCGGGGCCggcguuguaggcgGCguaggcuuucggcaGGUCGCCGccgaagucGCGCa -3' miRNA: 3'- -GCGGUCCCGGa------------CG--------------CCGGCGGCc-------CGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 13447 | 0.7 | 0.065506 |
Target: 5'- cCGCCA--GCUUgGCGGCC-UCGGGCGCg -3' miRNA: 3'- -GCGGUccCGGA-CGCCGGcGGCCCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 13820 | 0.67 | 0.12744 |
Target: 5'- -aCCAGGGCaaGCGcGaCGCCGuGCGCg -3' miRNA: 3'- gcGGUCCCGgaCGC-CgGCGGCcCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 14044 | 0.69 | 0.090417 |
Target: 5'- gCGCCGcgauGGCCgGCGGCCGCaaGGuCGUg -3' miRNA: 3'- -GCGGUc---CCGGaCGCCGGCGgcCC-GCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 14137 | 0.67 | 0.114759 |
Target: 5'- gGCCAGcGGCUUGCcuuccGGCCGUUccaGCGCg -3' miRNA: 3'- gCGGUC-CCGGACG-----CCGGCGGcc-CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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