miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26709 3' -68.6 NC_005808.1 + 30058 0.66 0.136721
Target:  5'- uCGCaCuGGuGCCggaaauauccuuugUGCGGCgC-CCGGGCGCc -3'
miRNA:   3'- -GCG-GuCC-CGG--------------ACGCCG-GcGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 29745 0.68 0.100564
Target:  5'- aCGCCGuagaacucGGCCU-CGGCUGCUGccaGGCGCg -3'
miRNA:   3'- -GCGGUc-------CCGGAcGCCGGCGGC---CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 29591 0.69 0.079951
Target:  5'- gCGcCCAGGcGC--GCGGUuugccaguuguccagCGCCGGGCGCu -3'
miRNA:   3'- -GC-GGUCC-CGgaCGCCG---------------GCGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 29421 0.66 0.141042
Target:  5'- gGCCaAGGGCgCccagcGCGGCCGacacuggccgacaUCGaGGCGCa -3'
miRNA:   3'- gCGG-UCCCG-Ga----CGCCGGC-------------GGC-CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 29047 0.67 0.130808
Target:  5'- uCGCCGuGGGCaccgagucagGCGGCCGaCaguucGGCGCg -3'
miRNA:   3'- -GCGGU-CCCGga--------CGCCGGC-Ggc---CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 28658 0.68 0.095363
Target:  5'- uGCCAgaucGGuGCCgGCGGCCucGCCagcgcGGCGCg -3'
miRNA:   3'- gCGGU----CC-CGGaCGCCGG--CGGc----CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 28524 0.7 0.068031
Target:  5'- uGCCGGcgcugcuuguugaacGGCacgaccuUGCGGCCGCCGgccaucgcGGCGCg -3'
miRNA:   3'- gCGGUC---------------CCGg------ACGCCGGCGGC--------CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 27856 0.7 0.065683
Target:  5'- gCGCCAaugcugcgcguacuGCCUGgGGCUaCCGGGCGCa -3'
miRNA:   3'- -GCGGUcc------------CGGACgCCGGcGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 27766 0.67 0.120629
Target:  5'- cCGCCAacggcaucgaccuGGGCgaagGCaGcGCCGCCGaGGUGCa -3'
miRNA:   3'- -GCGGU-------------CCCGga--CG-C-CGGCGGC-CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 27500 0.77 0.018033
Target:  5'- uGCCGGcGGCCU-CGGCCGCCagcuucucGGCGCg -3'
miRNA:   3'- gCGGUC-CCGGAcGCCGGCGGc-------CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 27422 0.68 0.106032
Target:  5'- gCGCCuGGcgcaccgcGCCcgGCGGCCGCaggcccuGGCGCu -3'
miRNA:   3'- -GCGGuCC--------CGGa-CGCCGGCGgc-----CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 27066 0.67 0.111778
Target:  5'- uGCuCAGGGCgucagcccCUGCuGGUCGaaaaccuaCCGGGUGCa -3'
miRNA:   3'- gCG-GUCCCG--------GACG-CCGGC--------GGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 25779 0.67 0.124153
Target:  5'- gCGCCGcGugaaCUGC-GCCGCCuGGGCGCg -3'
miRNA:   3'- -GCGGUcCcg--GACGcCGGCGG-CCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 25722 0.73 0.039687
Target:  5'- gCGgCGGGGUCgucguccucaccgGCGGCagcaCGCUGGGCGCg -3'
miRNA:   3'- -GCgGUCCCGGa------------CGCCG----GCGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 25586 0.67 0.110898
Target:  5'- aCGCCGcGGUCUGCGGCCcagGCaguggcaaccacggcGGCGCg -3'
miRNA:   3'- -GCGGUcCCGGACGCCGG---CGgc-------------CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 24609 0.67 0.120945
Target:  5'- uGCCGGGGUaggucaGCGGCaCGUCGaaccacauGGCGUg -3'
miRNA:   3'- gCGGUCCCGga----CGCCG-GCGGC--------CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 24192 0.69 0.090417
Target:  5'- aCGCCAccuucGCCgacGUGGCCGCCaccGGCGCc -3'
miRNA:   3'- -GCGGUcc---CGGa--CGCCGGCGGc--CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 22377 0.66 0.141408
Target:  5'- -cCCAaGGCCaacaGcCGGCCG-CGGGCGCu -3'
miRNA:   3'- gcGGUcCCGGa---C-GCCGGCgGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 22160 0.71 0.060397
Target:  5'- -aCgAGGGCCUGCGGCUaCU-GGCGCa -3'
miRNA:   3'- gcGgUCCCGGACGCCGGcGGcCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 21453 0.72 0.049931
Target:  5'- -aCCAGGGCgCggacacgGCGGCCaaGCUGGGCaGCg -3'
miRNA:   3'- gcGGUCCCG-Ga------CGCCGG--CGGCCCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.