miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26709 3' -68.6 NC_005808.1 + 19482 0.67 0.124153
Target:  5'- gCGCCAGGuGCCgguggGCaGGCCGCUGcGaaccguggucuuGUGCu -3'
miRNA:   3'- -GCGGUCC-CGGa----CG-CCGGCGGC-C------------CGCG- -5'
26709 3' -68.6 NC_005808.1 + 19477 0.68 0.097931
Target:  5'- uGUCAGGaGCCguuaccGCuGUCGCCguGGGCGCc -3'
miRNA:   3'- gCGGUCC-CGGa-----CGcCGGCGG--CCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 19037 0.71 0.060397
Target:  5'- aGCCcuGGUa-GCGGCCGCCGGcgGCGUc -3'
miRNA:   3'- gCGGucCCGgaCGCCGGCGGCC--CGCG- -5'
26709 3' -68.6 NC_005808.1 + 18161 0.66 0.14362
Target:  5'- uCGCCGaGGCCgcgcGCGGCaccgacaaaucggGCCGGcuGCGCu -3'
miRNA:   3'- -GCGGUcCCGGa---CGCCGg------------CGGCC--CGCG- -5'
26709 3' -68.6 NC_005808.1 + 18067 0.73 0.036956
Target:  5'- gCGCgGGGuGCgUGCugGGCCGCCGaagccGGCGCg -3'
miRNA:   3'- -GCGgUCC-CGgACG--CCGGCGGC-----CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 17918 0.71 0.054181
Target:  5'- aGCCuGGGCgUggacGUGGcCCGCggCGGGCGCg -3'
miRNA:   3'- gCGGuCCCGgA----CGCC-GGCG--GCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 17472 0.66 0.152789
Target:  5'- aCGCCAGGGCCUGCa--CGaacaGcGGCGa -3'
miRNA:   3'- -GCGGUCCCGGACGccgGCgg--C-CCGCg -5'
26709 3' -68.6 NC_005808.1 + 17397 0.66 0.141408
Target:  5'- aGCC-GGGCCaGCGGUCG-CGcGUGCu -3'
miRNA:   3'- gCGGuCCCGGaCGCCGGCgGCcCGCG- -5'
26709 3' -68.6 NC_005808.1 + 17268 0.68 0.105194
Target:  5'- aGCCGGGGauaUUGCcguccacgaagccgGcGCCG-CGGGCGCg -3'
miRNA:   3'- gCGGUCCCg--GACG--------------C-CGGCgGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 17007 0.66 0.141408
Target:  5'- uGCCAcuGCCUG-GGCCGCagacCGcGGCGUa -3'
miRNA:   3'- gCGGUccCGGACgCCGGCG----GC-CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 16123 0.72 0.048455
Target:  5'- aCGUCGGuGGCCccgacguaggacUGCGGCCGCacgcugaugguggUGGGCGUu -3'
miRNA:   3'- -GCGGUC-CCGG------------ACGCCGGCG-------------GCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 16042 0.71 0.062055
Target:  5'- uGCCAGuuguaGGCCaguucgcgcacGUGGCCGCCGcGCGCg -3'
miRNA:   3'- gCGGUC-----CCGGa----------CGCCGGCGGCcCGCG- -5'
26709 3' -68.6 NC_005808.1 + 15160 1.1 0.000034
Target:  5'- gCGCCAGGGCCUGCGGCCGCCGGGCGCg -3'
miRNA:   3'- -GCGGUCCCGGACGCCGGCGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 15099 0.69 0.076796
Target:  5'- aGCUGGcGGCCga-GGCCGCCGGcauccucGCGUg -3'
miRNA:   3'- gCGGUC-CCGGacgCCGGCGGCC-------CGCG- -5'
26709 3' -68.6 NC_005808.1 + 14890 0.7 0.065506
Target:  5'- uGaCCGGcGGCgaGCcGCUGCCGGcGCGCg -3'
miRNA:   3'- gC-GGUC-CCGgaCGcCGGCGGCC-CGCG- -5'
26709 3' -68.6 NC_005808.1 + 14833 0.72 0.05131
Target:  5'- uCGcCCAGGucgauGCCguugGCGGCCagcgccgcacGCUGGGCGCc -3'
miRNA:   3'- -GC-GGUCC-----CGGa---CGCCGG----------CGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 14795 0.71 0.058781
Target:  5'- gCGCgAGGacGUgCUGCGGCUGCgCGGcGCGCg -3'
miRNA:   3'- -GCGgUCC--CG-GACGCCGGCG-GCC-CGCG- -5'
26709 3' -68.6 NC_005808.1 + 14421 0.77 0.019596
Target:  5'- uCGCCAGGcgcGCCUGCGGCaccguGuuGGGCGa -3'
miRNA:   3'- -GCGGUCC---CGGACGCCGg----CggCCCGCg -5'
26709 3' -68.6 NC_005808.1 + 14342 0.68 0.10801
Target:  5'- uGCC-GGGCCUGCuGGuUCGCgguguccuggaaggCGGGgGCa -3'
miRNA:   3'- gCGGuCCCGGACG-CC-GGCG--------------GCCCgCG- -5'
26709 3' -68.6 NC_005808.1 + 14137 0.67 0.114759
Target:  5'- gGCCAGcGGCUUGCcuuccGGCCGUUccaGCGCg -3'
miRNA:   3'- gCGGUC-CCGGACG-----CCGGCGGcc-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.