miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26709 3' -68.6 NC_005808.1 + 432 0.69 0.077002
Target:  5'- gGCCGuaccuugucguuGGGCUgcugcGCGGCCaGCuugCGGGCGCu -3'
miRNA:   3'- gCGGU------------CCCGGa----CGCCGG-CG---GCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 13156 0.69 0.077002
Target:  5'- gCGCCucgaugucGGCCagUGuCGGCCGCgcUGGGCGCc -3'
miRNA:   3'- -GCGGuc------CCGG--AC-GCCGGCG--GCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 25722 0.73 0.039687
Target:  5'- gCGgCGGGGUCgucguccucaccgGCGGCagcaCGCUGGGCGCg -3'
miRNA:   3'- -GCgGUCCCGGa------------CGCCG----GCGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 1707 0.73 0.037984
Target:  5'- uCGCCGuGGGCCgGCGuGCCGgCgaGGGCGUc -3'
miRNA:   3'- -GCGGU-CCCGGaCGC-CGGCgG--CCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 8852 0.73 0.03788
Target:  5'- gGCCAGcgcguuGGCCU-CGGUCGCCacgaagcGGGCGCg -3'
miRNA:   3'- gCGGUC------CCGGAcGCCGGCGG-------CCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 18067 0.73 0.036956
Target:  5'- gCGCgGGGuGCgUGCugGGCCGCCGaagccGGCGCg -3'
miRNA:   3'- -GCGgUCC-CGgACG--CCGGCGGC-----CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 6238 0.75 0.025134
Target:  5'- gGCCAGGGCCUGCa--CGCCGguaacGGUGCg -3'
miRNA:   3'- gCGGUCCCGGACGccgGCGGC-----CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 14421 0.77 0.019596
Target:  5'- uCGCCAGGcgcGCCUGCGGCaccguGuuGGGCGa -3'
miRNA:   3'- -GCGGUCC---CGGACGCCGg----CggCCCGCg -5'
26709 3' -68.6 NC_005808.1 + 27500 0.77 0.018033
Target:  5'- uGCCGGcGGCCU-CGGCCGCCagcuucucGGCGCg -3'
miRNA:   3'- gCGGUC-CCGGAcGCCGGCGGc-------CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 11405 0.77 0.017061
Target:  5'- gGCCAGGGUCUugagcaGCGGCgaGCCGGcGUGCa -3'
miRNA:   3'- gCGGUCCCGGA------CGCCGg-CGGCC-CGCG- -5'
26709 3' -68.6 NC_005808.1 + 9458 0.72 0.04728
Target:  5'- aCGCCgAGGGCCUGauaGGCaGCgaauucuuCGGGCGUc -3'
miRNA:   3'- -GCGG-UCCCGGACg--CCGgCG--------GCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 38897 0.72 0.04728
Target:  5'- gCGCCgcauGGGGCa-GCGcGUCGCCGGGUGg -3'
miRNA:   3'- -GCGG----UCCCGgaCGC-CGGCGGCCCGCg -5'
26709 3' -68.6 NC_005808.1 + 37438 0.7 0.07297
Target:  5'- uCGCCaAGGGCgUGagcagcgaCGGCCGCCu-GCGCg -3'
miRNA:   3'- -GCGG-UCCCGgAC--------GCCGGCGGccCGCG- -5'
26709 3' -68.6 NC_005808.1 + 28524 0.7 0.068031
Target:  5'- uGCCGGcgcugcuuguugaacGGCacgaccuUGCGGCCGCCGgccaucgcGGCGCg -3'
miRNA:   3'- gCGGUC---------------CCGg------ACGCCGGCGGC--------CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 13447 0.7 0.065506
Target:  5'- cCGCCA--GCUUgGCGGCC-UCGGGCGCg -3'
miRNA:   3'- -GCGGUccCGGA-CGCCGGcGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 16042 0.71 0.062055
Target:  5'- uGCCAGuuguaGGCCaguucgcgcacGUGGCCGCCGcGCGCg -3'
miRNA:   3'- gCGGUC-----CCGGa----------CGCCGGCGGCcCGCG- -5'
26709 3' -68.6 NC_005808.1 + 19037 0.71 0.060397
Target:  5'- aGCCcuGGUa-GCGGCCGCCGGcgGCGUc -3'
miRNA:   3'- gCGGucCCGgaCGCCGGCGGCC--CGCG- -5'
26709 3' -68.6 NC_005808.1 + 36246 0.71 0.058781
Target:  5'- gCGCCccGGCCUuCGG--GCCGGGCGCu -3'
miRNA:   3'- -GCGGucCCGGAcGCCggCGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 14833 0.72 0.05131
Target:  5'- uCGcCCAGGucgauGCCguugGCGGCCagcgccgcacGCUGGGCGCc -3'
miRNA:   3'- -GC-GGUCC-----CGGa---CGCCGG----------CGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 16123 0.72 0.048455
Target:  5'- aCGUCGGuGGCCccgacguaggacUGCGGCCGCacgcugaugguggUGGGCGUu -3'
miRNA:   3'- -GCGGUC-CCGG------------ACGCCGGCG-------------GCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.