miRNA display CGI


Results 81 - 99 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26709 3' -68.6 NC_005808.1 + 17918 0.71 0.054181
Target:  5'- aGCCuGGGCgUggacGUGGcCCGCggCGGGCGCg -3'
miRNA:   3'- gCGGuCCCGgA----CGCC-GGCG--GCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 21453 0.72 0.049931
Target:  5'- -aCCAGGGCgCggacacgGCGGCCaaGCUGGGCaGCg -3'
miRNA:   3'- gcGGUCCCG-Ga------CGCCGG--CGGCCCG-CG- -5'
26709 3' -68.6 NC_005808.1 + 41280 0.72 0.048588
Target:  5'- gCGCUugucGGCCUgGUGGCCGUCgcccuGGGCGCg -3'
miRNA:   3'- -GCGGuc--CCGGA-CGCCGGCGG-----CCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 10235 0.73 0.041126
Target:  5'- gGCCGGGGCCUcgGCGGCgacCGCagcgaccUGGGCGg -3'
miRNA:   3'- gCGGUCCCGGA--CGCCG---GCG-------GCCCGCg -5'
26709 3' -68.6 NC_005808.1 + 12501 0.73 0.038933
Target:  5'- uCGCCugggacaAGGGCC-GUGGCgC-CCGGGCGCc -3'
miRNA:   3'- -GCGG-------UCCCGGaCGCCG-GcGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 6366 0.83 0.00625
Target:  5'- gGCCGGGGCgCUGgguuacaccagguCGGCCGCCGcGGCGCc -3'
miRNA:   3'- gCGGUCCCG-GAC-------------GCCGGCGGC-CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 14890 0.7 0.065506
Target:  5'- uGaCCGGcGGCgaGCcGCUGCCGGcGCGCg -3'
miRNA:   3'- gC-GGUC-CCGgaCGcCGGCGGCC-CGCG- -5'
26709 3' -68.6 NC_005808.1 + 27856 0.7 0.065683
Target:  5'- gCGCCAaugcugcgcguacuGCCUGgGGCUaCCGGGCGCa -3'
miRNA:   3'- -GCGGUcc------------CGGACgCCGGcGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 7142 0.7 0.069141
Target:  5'- aGUCGucGgCUGCGGCCuggaugaccaggGCCGGGCGCu -3'
miRNA:   3'- gCGGUccCgGACGCCGG------------CGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 24192 0.69 0.090417
Target:  5'- aCGCCAccuucGCCgacGUGGCCGCCaccGGCGCc -3'
miRNA:   3'- -GCGGUcc---CGGa--CGCCGGCGGc--CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 14044 0.69 0.090417
Target:  5'- gCGCCGcgauGGCCgGCGGCCGCaaGGuCGUg -3'
miRNA:   3'- -GCGGUc---CCGGaCGCCGGCGgcCC-GCG- -5'
26709 3' -68.6 NC_005808.1 + 2823 0.69 0.081248
Target:  5'- gGCCAGGuGCUcGCGGCCacGCgcaGcGGCGCc -3'
miRNA:   3'- gCGGUCC-CGGaCGCCGG--CGg--C-CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 15099 0.69 0.076796
Target:  5'- aGCUGGcGGCCga-GGCCGCCGGcauccucGCGUg -3'
miRNA:   3'- gCGGUC-CCGGacgCCGGCGGCC-------CGCG- -5'
26709 3' -68.6 NC_005808.1 + 11294 0.7 0.07496
Target:  5'- aGCC-GGGCCaccacGCGGUCGCCaGGCu- -3'
miRNA:   3'- gCGGuCCCGGa----CGCCGGCGGcCCGcg -5'
26709 3' -68.6 NC_005808.1 + 31006 0.7 0.07297
Target:  5'- uGcCCGGcGGCCagccgGCGGCC-CUGGGCGg -3'
miRNA:   3'- gC-GGUC-CCGGa----CGCCGGcGGCCCGCg -5'
26709 3' -68.6 NC_005808.1 + 2642 0.7 0.072774
Target:  5'- aGCCaccacuuugcggaAGGGCCaGCGGUCGCCcaGGUGUu -3'
miRNA:   3'- gCGG-------------UCCCGGaCGCCGGCGGc-CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 42080 0.7 0.071031
Target:  5'- gGCCGaacagaaccGCCUGCaaGCCGCCGcGGCGCa -3'
miRNA:   3'- gCGGUcc-------CGGACGc-CGGCGGC-CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 10498 0.7 0.071031
Target:  5'- gGCCAGGGCgUugagcaacGCGGCCGUguuggCGGG-GCc -3'
miRNA:   3'- gCGGUCCCGgA--------CGCCGGCG-----GCCCgCG- -5'
26709 3' -68.6 NC_005808.1 + 15160 1.1 0.000034
Target:  5'- gCGCCAGGGCCUGCGGCCGCCGGGCGCg -3'
miRNA:   3'- -GCGGUCCCGGACGCCGGCGGCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.