miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26709 3' -68.6 NC_005808.1 + 6591 0.7 0.063758
Target:  5'- gGCCAgGGGgCUGCGGUCuuuGUcgaugaccagCGGGCGCg -3'
miRNA:   3'- gCGGU-CCCgGACGCCGG---CG----------GCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 18161 0.66 0.14362
Target:  5'- uCGCCGaGGCCgcgcGCGGCaccgacaaaucggGCCGGcuGCGCu -3'
miRNA:   3'- -GCGGUcCCGGa---CGCCGg------------CGGCC--CGCG- -5'
26709 3' -68.6 NC_005808.1 + 41548 0.66 0.145113
Target:  5'- aCGCCGGuucgcGGCgacaUGCuGCCGCCGGcCGUg -3'
miRNA:   3'- -GCGGUC-----CCGg---ACGcCGGCGGCCcGCG- -5'
26709 3' -68.6 NC_005808.1 + 29421 0.66 0.141042
Target:  5'- gGCCaAGGGCgCccagcGCGGCCGacacuggccgacaUCGaGGCGCa -3'
miRNA:   3'- gCGG-UCCCG-Ga----CGCCGGC-------------GGC-CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 2726 0.67 0.130808
Target:  5'- gGCCGGacgcuugagcgcGGCCcgGC-GCUGCuCGGGCGUg -3'
miRNA:   3'- gCGGUC------------CCGGa-CGcCGGCG-GCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 25779 0.67 0.124153
Target:  5'- gCGCCGcGugaaCUGC-GCCGCCuGGGCGCg -3'
miRNA:   3'- -GCGGUcCcg--GACGcCGGCGG-CCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 8852 0.73 0.03788
Target:  5'- gGCCAGcgcguuGGCCU-CGGUCGCCacgaagcGGGCGCg -3'
miRNA:   3'- gCGGUC------CCGGAcGCCGGCGG-------CCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 17472 0.66 0.152789
Target:  5'- aCGCCAGGGCCUGCa--CGaacaGcGGCGa -3'
miRNA:   3'- -GCGGUCCCGGACGccgGCgg--C-CCGCg -5'
26709 3' -68.6 NC_005808.1 + 8414 0.66 0.156764
Target:  5'- gGCCAGGGCCgUGCgcuugucuacGGCCuugaggcuuugGCCcuuGCGCa -3'
miRNA:   3'- gCGGUCCCGG-ACG----------CCGG-----------CGGcc-CGCG- -5'
26709 3' -68.6 NC_005808.1 + 10927 0.66 0.152397
Target:  5'- cCGCCgguuugcAGGGCCUcgggcaguugcGCGGCgacaGCCGGGg-- -3'
miRNA:   3'- -GCGG-------UCCCGGA-----------CGCCGg---CGGCCCgcg -5'
26709 3' -68.6 NC_005808.1 + 32350 0.66 0.148906
Target:  5'- cCGcCCAGGuCgCUGCGGUCGCCGccgaggccccGGcCGCc -3'
miRNA:   3'- -GC-GGUCCcG-GACGCCGGCGGC----------CC-GCG- -5'
26709 3' -68.6 NC_005808.1 + 30180 0.68 0.103264
Target:  5'- gCGCCAGucggugaaGGCCaUGaaguaGCCGCCGGGCu- -3'
miRNA:   3'- -GCGGUC--------CCGG-ACgc---CGGCGGCCCGcg -5'
26709 3' -68.6 NC_005808.1 + 17268 0.68 0.105194
Target:  5'- aGCCGGGGauaUUGCcguccacgaagccgGcGCCG-CGGGCGCg -3'
miRNA:   3'- gCGGUCCCg--GACG--------------C-CGGCgGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 27422 0.68 0.106032
Target:  5'- gCGCCuGGcgcaccgcGCCcgGCGGCCGCaggcccuGGCGCu -3'
miRNA:   3'- -GCGGuCC--------CGGa-CGCCGGCGgc-----CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 32917 0.68 0.097931
Target:  5'- gGCCAcGGCCUgcacgGCGGCUguucgGCCaGGGCGa -3'
miRNA:   3'- gCGGUcCCGGA-----CGCCGG-----CGG-CCCGCg -5'
26709 3' -68.6 NC_005808.1 + 28658 0.68 0.095363
Target:  5'- uGCCAgaucGGuGCCgGCGGCCucGCCagcgcGGCGCg -3'
miRNA:   3'- gCGGU----CC-CGGaCGCCGG--CGGc----CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 14342 0.68 0.10801
Target:  5'- uGCC-GGGCCUGCuGGuUCGCgguguccuggaaggCGGGgGCa -3'
miRNA:   3'- gCGGuCCCGGACG-CC-GGCG--------------GCCCgCG- -5'
26709 3' -68.6 NC_005808.1 + 19037 0.71 0.060397
Target:  5'- aGCCcuGGUa-GCGGCCGCCGGcgGCGUc -3'
miRNA:   3'- gCGGucCCGgaCGCCGGCGGCC--CGCG- -5'
26709 3' -68.6 NC_005808.1 + 36246 0.71 0.058781
Target:  5'- gCGCCccGGCCUuCGG--GCCGGGCGCu -3'
miRNA:   3'- -GCGGucCCGGAcGCCggCGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 14833 0.72 0.05131
Target:  5'- uCGcCCAGGucgauGCCguugGCGGCCagcgccgcacGCUGGGCGCc -3'
miRNA:   3'- -GC-GGUCC-----CGGa---CGCCGG----------CGGCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.