Results 61 - 80 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26709 | 3' | -68.6 | NC_005808.1 | + | 16123 | 0.72 | 0.048455 |
Target: 5'- aCGUCGGuGGCCccgacguaggacUGCGGCCGCacgcugaugguggUGGGCGUu -3' miRNA: 3'- -GCGGUC-CCGG------------ACGCCGGCG-------------GCCCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 9458 | 0.72 | 0.04728 |
Target: 5'- aCGCCgAGGGCCUGauaGGCaGCgaauucuuCGGGCGUc -3' miRNA: 3'- -GCGG-UCCCGGACg--CCGgCG--------GCCCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 8852 | 0.73 | 0.03788 |
Target: 5'- gGCCAGcgcguuGGCCU-CGGUCGCCacgaagcGGGCGCg -3' miRNA: 3'- gCGGUC------CCGGAcGCCGGCGG-------CCCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 18067 | 0.73 | 0.036956 |
Target: 5'- gCGCgGGGuGCgUGCugGGCCGCCGaagccGGCGCg -3' miRNA: 3'- -GCGgUCC-CGgACG--CCGGCGGC-----CCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 32917 | 0.68 | 0.097931 |
Target: 5'- gGCCAcGGCCUgcacgGCGGCUguucgGCCaGGGCGa -3' miRNA: 3'- gCGGUcCCGGA-----CGCCGG-----CGG-CCCGCg -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 29745 | 0.68 | 0.100564 |
Target: 5'- aCGCCGuagaacucGGCCU-CGGCUGCUGccaGGCGCg -3' miRNA: 3'- -GCGGUc-------CCGGAcGCCGGCGGC---CCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 30180 | 0.68 | 0.103264 |
Target: 5'- gCGCCAGucggugaaGGCCaUGaaguaGCCGCCGGGCu- -3' miRNA: 3'- -GCGGUC--------CCGG-ACgc---CGGCGGCCCGcg -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 8128 | 0.66 | 0.141408 |
Target: 5'- gGCCGgcguugguuguGGGCgUGCGGgUGUCGG-CGCu -3' miRNA: 3'- gCGGU-----------CCCGgACGCCgGCGGCCcGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 13305 | 0.66 | 0.138866 |
Target: 5'- gCGCCGGGGCCggcguuguaggcgGCguaggcuuucggcaGGUCGCCGccgaagucGCGCa -3' miRNA: 3'- -GCGGUCCCGGa------------CG--------------CCGGCGGCc-------CGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 31066 | 0.66 | 0.13779 |
Target: 5'- gGCCcgaacaucaGGGGCCUG-GuGCCGCUGcucaccucGGUGCa -3' miRNA: 3'- gCGG---------UCCCGGACgC-CGGCGGC--------CCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 30058 | 0.66 | 0.136721 |
Target: 5'- uCGCaCuGGuGCCggaaauauccuuugUGCGGCgC-CCGGGCGCc -3' miRNA: 3'- -GCG-GuCC-CGG--------------ACGCCG-GcGGCCCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 39512 | 0.67 | 0.124153 |
Target: 5'- uGCCgcgugucgaAGGGCaugggUGCGGCU--CGGGCGCu -3' miRNA: 3'- gCGG---------UCCCGg----ACGCCGGcgGCCCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 19482 | 0.67 | 0.124153 |
Target: 5'- gCGCCAGGuGCCgguggGCaGGCCGCUGcGaaccguggucuuGUGCu -3' miRNA: 3'- -GCGGUCC-CGGa----CG-CCGGCGGC-C------------CGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 1036 | 0.67 | 0.123829 |
Target: 5'- gGCCAcGGCCgGCGGCagcauguCGCCGcgaaccGGCGUc -3' miRNA: 3'- gCGGUcCCGGaCGCCG-------GCGGC------CCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 7599 | 0.67 | 0.122219 |
Target: 5'- gGUCAGGGUCUGUccguCUGCCguggugauggucaggGGGCGCg -3' miRNA: 3'- gCGGUCCCGGACGcc--GGCGG---------------CCCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 24609 | 0.67 | 0.120945 |
Target: 5'- uGCCGGGGUaggucaGCGGCaCGUCGaaccacauGGCGUg -3' miRNA: 3'- gCGGUCCCGga----CGCCG-GCGGC--------CCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 4339 | 0.67 | 0.120945 |
Target: 5'- uGCCAGccuugaugcuGGCCguUGC-GuuGCCGGuGCGCg -3' miRNA: 3'- gCGGUC----------CCGG--ACGcCggCGGCC-CGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 14342 | 0.68 | 0.10801 |
Target: 5'- uGCC-GGGCCUGCuGGuUCGCgguguccuggaaggCGGGgGCa -3' miRNA: 3'- gCGGuCCCGGACG-CC-GGCG--------------GCCCgCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 27422 | 0.68 | 0.106032 |
Target: 5'- gCGCCuGGcgcaccgcGCCcgGCGGCCGCaggcccuGGCGCu -3' miRNA: 3'- -GCGGuCC--------CGGa-CGCCGGCGgc-----CCGCG- -5' |
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26709 | 3' | -68.6 | NC_005808.1 | + | 17268 | 0.68 | 0.105194 |
Target: 5'- aGCCGGGGauaUUGCcguccacgaagccgGcGCCG-CGGGCGCg -3' miRNA: 3'- gCGGUCCCg--GACG--------------C-CGGCgGCCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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