miRNA display CGI


Results 81 - 99 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26709 3' -68.6 NC_005808.1 + 19482 0.67 0.124153
Target:  5'- gCGCCAGGuGCCgguggGCaGGCCGCUGcGaaccguggucuuGUGCu -3'
miRNA:   3'- -GCGGUCC-CGGa----CG-CCGGCGGC-C------------CGCG- -5'
26709 3' -68.6 NC_005808.1 + 39512 0.67 0.124153
Target:  5'- uGCCgcgugucgaAGGGCaugggUGCGGCU--CGGGCGCu -3'
miRNA:   3'- gCGG---------UCCCGg----ACGCCGGcgGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 30058 0.66 0.136721
Target:  5'- uCGCaCuGGuGCCggaaauauccuuugUGCGGCgC-CCGGGCGCc -3'
miRNA:   3'- -GCG-GuCC-CGG--------------ACGCCG-GcGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 31066 0.66 0.13779
Target:  5'- gGCCcgaacaucaGGGGCCUG-GuGCCGCUGcucaccucGGUGCa -3'
miRNA:   3'- gCGG---------UCCCGGACgC-CGGCGGC--------CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 13305 0.66 0.138866
Target:  5'- gCGCCGGGGCCggcguuguaggcgGCguaggcuuucggcaGGUCGCCGccgaagucGCGCa -3'
miRNA:   3'- -GCGGUCCCGGa------------CG--------------CCGGCGGCc-------CGCG- -5'
26709 3' -68.6 NC_005808.1 + 8128 0.66 0.141408
Target:  5'- gGCCGgcguugguuguGGGCgUGCGGgUGUCGG-CGCu -3'
miRNA:   3'- gCGGU-----------CCCGgACGCCgGCGGCCcGCG- -5'
26709 3' -68.6 NC_005808.1 + 5898 0.67 0.117814
Target:  5'- uCGCCAGcguGGUgaGUGuGCCGCCGGGa-- -3'
miRNA:   3'- -GCGGUC---CCGgaCGC-CGGCGGCCCgcg -5'
26709 3' -68.6 NC_005808.1 + 1596 0.67 0.117505
Target:  5'- uGCCacacGGGGUCgaggGuCGGCCcuucguaGUCGGGCGUg -3'
miRNA:   3'- gCGG----UCCCGGa---C-GCCGG-------CGGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 29745 0.68 0.100564
Target:  5'- aCGCCGuagaacucGGCCU-CGGCUGCUGccaGGCGCg -3'
miRNA:   3'- -GCGGUc-------CCGGAcGCCGGCGGC---CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 30180 0.68 0.103264
Target:  5'- gCGCCAGucggugaaGGCCaUGaaguaGCCGCCGGGCu- -3'
miRNA:   3'- -GCGGUC--------CCGG-ACgc---CGGCGGCCCGcg -5'
26709 3' -68.6 NC_005808.1 + 17268 0.68 0.105194
Target:  5'- aGCCGGGGauaUUGCcguccacgaagccgGcGCCG-CGGGCGCg -3'
miRNA:   3'- gCGGUCCCg--GACG--------------C-CGGCgGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 27422 0.68 0.106032
Target:  5'- gCGCCuGGcgcaccgcGCCcgGCGGCCGCaggcccuGGCGCu -3'
miRNA:   3'- -GCGGuCC--------CGGa-CGCCGGCGgc-----CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 14342 0.68 0.10801
Target:  5'- uGCC-GGGCCUGCuGGuUCGCgguguccuggaaggCGGGgGCa -3'
miRNA:   3'- gCGGuCCCGGACG-CC-GGCG--------------GCCCgCG- -5'
26709 3' -68.6 NC_005808.1 + 38090 0.68 0.108869
Target:  5'- gCGCUcaAGcGCCUGUGG-CGCCGcGCGCa -3'
miRNA:   3'- -GCGG--UCcCGGACGCCgGCGGCcCGCG- -5'
26709 3' -68.6 NC_005808.1 + 25586 0.67 0.110898
Target:  5'- aCGCCGcGGUCUGCGGCCcagGCaguggcaaccacggcGGCGCg -3'
miRNA:   3'- -GCGGUcCCGGACGCCGG---CGgc-------------CCGCG- -5'
26709 3' -68.6 NC_005808.1 + 27066 0.67 0.111778
Target:  5'- uGCuCAGGGCgucagcccCUGCuGGUCGaaaaccuaCCGGGUGCa -3'
miRNA:   3'- gCG-GUCCCG--------GACG-CCGGC--------GGCCCGCG- -5'
26709 3' -68.6 NC_005808.1 + 38551 0.67 0.111778
Target:  5'- gGCCGcuGGCCUGCcGCuCGCCGcGGCcgGCu -3'
miRNA:   3'- gCGGUc-CCGGACGcCG-GCGGC-CCG--CG- -5'
26709 3' -68.6 NC_005808.1 + 14137 0.67 0.114759
Target:  5'- gGCCAGcGGCUUGCcuuccGGCCGUUccaGCGCg -3'
miRNA:   3'- gCGGUC-CCGGACG-----CCGGCGGcc-CGCG- -5'
26709 3' -68.6 NC_005808.1 + 32350 0.66 0.148906
Target:  5'- cCGcCCAGGuCgCUGCGGUCGCCGccgaggccccGGcCGCc -3'
miRNA:   3'- -GC-GGUCCcG-GACGCCGGCGGC----------CC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.