miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26709 5' -56.1 NC_005808.1 + 26305 0.66 0.606948
Target:  5'- -cGUGCGCGACGACgacCGGGuagccuuccgGGUGGCc -3'
miRNA:   3'- ucCGCGCGCUGCUGau-GUUC----------UCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 8557 0.66 0.606948
Target:  5'- -cGCGC-CGAUGGCgggcagcgACAGGcGCGACa -3'
miRNA:   3'- ucCGCGcGCUGCUGa-------UGUUCuCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 15449 0.66 0.606948
Target:  5'- cGGCGCGUgGGgGACUuCGAGugaugcgcGCGGCg -3'
miRNA:   3'- uCCGCGCG-CUgCUGAuGUUCu-------CGCUG- -5'
26709 5' -56.1 NC_005808.1 + 22724 0.66 0.606948
Target:  5'- aAGGCGCGCGACGcCUucgGCAcGccCGAa -3'
miRNA:   3'- -UCCGCGCGCUGCuGA---UGUuCucGCUg -5'
26709 5' -56.1 NC_005808.1 + 8917 0.66 0.595807
Target:  5'- cGGCGCGCucGAUGGCUuCGGGcGUgGACa -3'
miRNA:   3'- uCCGCGCG--CUGCUGAuGUUCuCG-CUG- -5'
26709 5' -56.1 NC_005808.1 + 6293 0.66 0.581371
Target:  5'- gGGGCGC-CGG-GGCUuaucuccggugcguGCAAGAcGCGGCg -3'
miRNA:   3'- -UCCGCGcGCUgCUGA--------------UGUUCU-CGCUG- -5'
26709 5' -56.1 NC_005808.1 + 24014 0.66 0.573628
Target:  5'- uGGGCGCGuCGGCcaauuCaGCGAaGGCGACg -3'
miRNA:   3'- -UCCGCGC-GCUGcu---GaUGUUcUCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 38687 0.66 0.573628
Target:  5'- uGGGgGCGCGGCca-UGCGugaaAGCGACa -3'
miRNA:   3'- -UCCgCGCGCUGcugAUGUuc--UCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 9210 0.66 0.573628
Target:  5'- cGGCgGCGCGGCGcacguuCUGCGGcgcgcccGGCGGCa -3'
miRNA:   3'- uCCG-CGCGCUGCu-----GAUGUUc------UCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 14425 0.66 0.573628
Target:  5'- cAGGCGCGCcuGCGGC-ACcguguuGGGCGAa -3'
miRNA:   3'- -UCCGCGCGc-UGCUGaUGuu----CUCGCUg -5'
26709 5' -56.1 NC_005808.1 + 42148 0.66 0.573628
Target:  5'- uGGUGCGCGGCGA--GCAGaAG-GACa -3'
miRNA:   3'- uCCGCGCGCUGCUgaUGUUcUCgCUG- -5'
26709 5' -56.1 NC_005808.1 + 26032 0.66 0.573628
Target:  5'- cGGCGCGUcGCG-CUACAacgucuauaaGGAGCaaGGCg -3'
miRNA:   3'- uCCGCGCGcUGCuGAUGU----------UCUCG--CUG- -5'
26709 5' -56.1 NC_005808.1 + 25157 0.66 0.562608
Target:  5'- uGGCcucgaugcugGCGgGGCcACUGCucAAGGGCGACg -3'
miRNA:   3'- uCCG----------CGCgCUGcUGAUG--UUCUCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 32064 0.66 0.562608
Target:  5'- -uGCGCGUGGCGGCggaAAGcGUGGCc -3'
miRNA:   3'- ucCGCGCGCUGCUGaugUUCuCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 37240 0.66 0.562608
Target:  5'- uGGGCGCGgugcaGGCGGCcACGcAGcGCGAUg -3'
miRNA:   3'- -UCCGCGCg----CUGCUGaUGU-UCuCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 42413 0.66 0.562608
Target:  5'- cGGCaGCGUGACGG-UGCcc-AGCGACa -3'
miRNA:   3'- uCCG-CGCGCUGCUgAUGuucUCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 32922 0.67 0.551647
Target:  5'- cGGCcuGCaCGGCGGCUguucgGCcAGGGCGACc -3'
miRNA:   3'- uCCG--CGcGCUGCUGA-----UGuUCUCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 20533 0.67 0.551646
Target:  5'- -cGCGCGCcgaccGCGACccgaGCAAGcGCGACg -3'
miRNA:   3'- ucCGCGCGc----UGCUGa---UGUUCuCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 37826 0.67 0.551646
Target:  5'- uGGGCGCaGUGugGGCgaacgcCGAGAacaucGCGGCc -3'
miRNA:   3'- -UCCGCG-CGCugCUGau----GUUCU-----CGCUG- -5'
26709 5' -56.1 NC_005808.1 + 36043 0.67 0.551646
Target:  5'- aAGGaUGCGCuGACGcCUgGCGAuucGGGCGACg -3'
miRNA:   3'- -UCC-GCGCG-CUGCuGA-UGUU---CUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.