miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26709 5' -56.1 NC_005808.1 + 15194 1.1 0.000483
Target:  5'- cAGGCGCGCGACGACUACAAGAGCGACa -3'
miRNA:   3'- -UCCGCGCGCUGCUGAUGUUCUCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 31239 0.83 0.043728
Target:  5'- cGGCGCGCGGCccaGCUACGAGccgGGCGACg -3'
miRNA:   3'- uCCGCGCGCUGc--UGAUGUUC---UCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 34548 0.77 0.136078
Target:  5'- uGGGCGCGCgucaugGACGGCgGCAAGgacGGCGGCc -3'
miRNA:   3'- -UCCGCGCG------CUGCUGaUGUUC---UCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 20760 0.74 0.20606
Target:  5'- aAGGCGCagGCcauCGACUACAAGAGCa-- -3'
miRNA:   3'- -UCCGCG--CGcu-GCUGAUGUUCUCGcug -5'
26709 5' -56.1 NC_005808.1 + 40509 0.73 0.234938
Target:  5'- uGGGCGCGCuacaugGACGACaucguggUGCu-GGGCGACg -3'
miRNA:   3'- -UCCGCGCG------CUGCUG-------AUGuuCUCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 32130 0.72 0.261648
Target:  5'- cGGUGCuGCG-CGACUuCcAGGGCGACg -3'
miRNA:   3'- uCCGCG-CGCuGCUGAuGuUCUCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 34943 0.72 0.282721
Target:  5'- cGGCGCGUGuACGGCa--AGGAGcCGGCg -3'
miRNA:   3'- uCCGCGCGC-UGCUGaugUUCUC-GCUG- -5'
26709 5' -56.1 NC_005808.1 + 15320 0.72 0.293005
Target:  5'- aAGGCGCGCGGCGAacugcgguucauugcCUcggcCAAGAGCcuggGGCg -3'
miRNA:   3'- -UCCGCGCGCUGCU---------------GAu---GUUCUCG----CUG- -5'
26709 5' -56.1 NC_005808.1 + 14819 0.71 0.320786
Target:  5'- cGGCGCGCGcuuCGugUACGuguccGAGCcgGACg -3'
miRNA:   3'- uCCGCGCGCu--GCugAUGUu----CUCG--CUG- -5'
26709 5' -56.1 NC_005808.1 + 9895 0.71 0.328846
Target:  5'- cAGGCGCGUGGCGAUguc--GAGCuGCa -3'
miRNA:   3'- -UCCGCGCGCUGCUGauguuCUCGcUG- -5'
26709 5' -56.1 NC_005808.1 + 39149 0.7 0.340377
Target:  5'- gGGGCGCGCGGCGuCUGugaccaccugauucuUGAGuAGCGGg -3'
miRNA:   3'- -UCCGCGCGCUGCuGAU---------------GUUC-UCGCUg -5'
26709 5' -56.1 NC_005808.1 + 9323 0.7 0.345409
Target:  5'- cGGCGCaCGuCGGCgcgGCGGGcGGCGGCa -3'
miRNA:   3'- uCCGCGcGCuGCUGa--UGUUC-UCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 5431 0.7 0.353912
Target:  5'- cGGCGCG-GAUGGCgGCGuGGGCGAg -3'
miRNA:   3'- uCCGCGCgCUGCUGaUGUuCUCGCUg -5'
26709 5' -56.1 NC_005808.1 + 4043 0.7 0.362562
Target:  5'- cGGC-CGCGGCGAgcgGCAGGccAGCGGCc -3'
miRNA:   3'- uCCGcGCGCUGCUga-UGUUC--UCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 6624 0.7 0.362562
Target:  5'- cGGGCGCGUGGCG-CUGCGc--GCgGACa -3'
miRNA:   3'- -UCCGCGCGCUGCuGAUGUucuCG-CUG- -5'
26709 5' -56.1 NC_005808.1 + 26539 0.69 0.398605
Target:  5'- -cGCGCGCGGCGGCcACGuGcGCGAa -3'
miRNA:   3'- ucCGCGCGCUGCUGaUGUuCuCGCUg -5'
26709 5' -56.1 NC_005808.1 + 37444 0.69 0.398605
Target:  5'- aGGGCGUgagcaGCGACGGCcGCcuGcGCGGCa -3'
miRNA:   3'- -UCCGCG-----CGCUGCUGaUGuuCuCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 36515 0.69 0.398605
Target:  5'- aAGGcCGCGCucGACGACUuCGAG-GCGGu -3'
miRNA:   3'- -UCC-GCGCG--CUGCUGAuGUUCuCGCUg -5'
26709 5' -56.1 NC_005808.1 + 13793 0.69 0.407968
Target:  5'- cGGCGCGCuGGCuGCU-CAAGAuCGGCa -3'
miRNA:   3'- uCCGCGCG-CUGcUGAuGUUCUcGCUG- -5'
26709 5' -56.1 NC_005808.1 + 14789 0.69 0.427099
Target:  5'- cAGcGCGCGCGAgGACgUGCu---GCGGCu -3'
miRNA:   3'- -UC-CGCGCGCUgCUG-AUGuucuCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.