miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26709 5' -56.1 NC_005808.1 + 31239 0.83 0.043728
Target:  5'- cGGCGCGCGGCccaGCUACGAGccgGGCGACg -3'
miRNA:   3'- uCCGCGCGCUGc--UGAUGUUC---UCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 32922 0.67 0.551647
Target:  5'- cGGCcuGCaCGGCGGCUguucgGCcAGGGCGACc -3'
miRNA:   3'- uCCG--CGcGCUGCUGA-----UGuUCUCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 37240 0.66 0.562608
Target:  5'- uGGGCGCGgugcaGGCGGCcACGcAGcGCGAUg -3'
miRNA:   3'- -UCCGCGCg----CUGCUGaUGU-UCuCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 24014 0.66 0.573628
Target:  5'- uGGGCGCGuCGGCcaauuCaGCGAaGGCGACg -3'
miRNA:   3'- -UCCGCGC-GCUGcu---GaUGUUcUCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 38687 0.66 0.573628
Target:  5'- uGGGgGCGCGGCca-UGCGugaaAGCGACa -3'
miRNA:   3'- -UCCgCGCGCUGcugAUGUuc--UCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 9210 0.66 0.573628
Target:  5'- cGGCgGCGCGGCGcacguuCUGCGGcgcgcccGGCGGCa -3'
miRNA:   3'- uCCG-CGCGCUGCu-----GAUGUUc------UCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 14425 0.66 0.573628
Target:  5'- cAGGCGCGCcuGCGGC-ACcguguuGGGCGAa -3'
miRNA:   3'- -UCCGCGCGc-UGCUGaUGuu----CUCGCUg -5'
26709 5' -56.1 NC_005808.1 + 42148 0.66 0.573628
Target:  5'- uGGUGCGCGGCGA--GCAGaAG-GACa -3'
miRNA:   3'- uCCGCGCGCUGCUgaUGUUcUCgCUG- -5'
26709 5' -56.1 NC_005808.1 + 8917 0.66 0.595807
Target:  5'- cGGCGCGCucGAUGGCUuCGGGcGUgGACa -3'
miRNA:   3'- uCCGCGCG--CUGCUGAuGUUCuCG-CUG- -5'
26709 5' -56.1 NC_005808.1 + 37903 0.67 0.550554
Target:  5'- aGGGCG-GCGuCGGugccuuuCUACcGGGGCGGCu -3'
miRNA:   3'- -UCCGCgCGCuGCU-------GAUGuUCUCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 16470 0.67 0.540751
Target:  5'- cGGGgGCGUGACGGacagguCGGGcGCGAUa -3'
miRNA:   3'- -UCCgCGCGCUGCUgau---GUUCuCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 26814 0.67 0.539665
Target:  5'- uAGGCGUGCuguuuuuGGCaGGCUGCGccgccccgauGGAGCGGg -3'
miRNA:   3'- -UCCGCGCG-------CUG-CUGAUGU----------UCUCGCUg -5'
26709 5' -56.1 NC_005808.1 + 9895 0.71 0.328846
Target:  5'- cAGGCGCGUGGCGAUguc--GAGCuGCa -3'
miRNA:   3'- -UCCGCGCGCUGCUGauguuCUCGcUG- -5'
26709 5' -56.1 NC_005808.1 + 9323 0.7 0.345409
Target:  5'- cGGCGCaCGuCGGCgcgGCGGGcGGCGGCa -3'
miRNA:   3'- uCCGCGcGCuGCUGa--UGUUC-UCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 36515 0.69 0.398605
Target:  5'- aAGGcCGCGCucGACGACUuCGAG-GCGGu -3'
miRNA:   3'- -UCC-GCGCG--CUGCUGAuGUUCuCGCUg -5'
26709 5' -56.1 NC_005808.1 + 37444 0.69 0.398605
Target:  5'- aGGGCGUgagcaGCGACGGCcGCcuGcGCGGCa -3'
miRNA:   3'- -UCCGCG-----CGCUGCUGaUGuuCuCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 25758 0.68 0.4669
Target:  5'- uGGGCGCGCugcugGGCGGCgGCAAcGAuggccGCGAUg -3'
miRNA:   3'- -UCCGCGCG-----CUGCUGaUGUU-CU-----CGCUG- -5'
26709 5' -56.1 NC_005808.1 + 4808 0.68 0.487505
Target:  5'- uGGCGCuGCGG-GAUUGCuGGccGGCGACa -3'
miRNA:   3'- uCCGCG-CGCUgCUGAUGuUC--UCGCUG- -5'
26709 5' -56.1 NC_005808.1 + 24557 0.67 0.497968
Target:  5'- -cGCaGCGCGGCGAUgGCGAGGcCGGCc -3'
miRNA:   3'- ucCG-CGCGCUGCUGaUGUUCUcGCUG- -5'
26709 5' -56.1 NC_005808.1 + 36123 0.67 0.497968
Target:  5'- cGGGCcuGCGCGGCGugcaguucCUGCGcGAcgGCGACg -3'
miRNA:   3'- -UCCG--CGCGCUGCu-------GAUGUuCU--CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.