miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2671 3' -58.3 NC_001491.2 + 144807 0.66 0.827728
Target:  5'- aUAGACUCaacGCgGCGGCCGccAGCu -3'
miRNA:   3'- gAUCUGGGguaCGgUGCCGGCucUCG- -5'
2671 3' -58.3 NC_001491.2 + 42492 0.66 0.827728
Target:  5'- gUGGGCCaggauCCGUaCCACGcGCCGGGccaGGCg -3'
miRNA:   3'- gAUCUGG-----GGUAcGGUGC-CGGCUC---UCG- -5'
2671 3' -58.3 NC_001491.2 + 8641 0.66 0.827728
Target:  5'- -cGGGCCCUgcGCCcguaccUGGcCCGGGGGCc -3'
miRNA:   3'- gaUCUGGGGuaCGGu-----GCC-GGCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 3985 0.66 0.827728
Target:  5'- --uGGCCaCCAggcgGCCGCguguggcagGGCCcAGAGCg -3'
miRNA:   3'- gauCUGG-GGUa---CGGUG---------CCGGcUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 67571 0.66 0.827728
Target:  5'- gCUGGGCCUgGgcGUUugGGgUGAGAGCc -3'
miRNA:   3'- -GAUCUGGGgUa-CGGugCCgGCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 118554 0.66 0.819341
Target:  5'- -gGGACCCaCAggaUugGGUCGAGuGCa -3'
miRNA:   3'- gaUCUGGG-GUacgGugCCGGCUCuCG- -5'
2671 3' -58.3 NC_001491.2 + 121397 0.66 0.819341
Target:  5'- --uGACCUCAaggacgugGCCAagcucacgcCGGCCGAGcGCg -3'
miRNA:   3'- gauCUGGGGUa-------CGGU---------GCCGGCUCuCG- -5'
2671 3' -58.3 NC_001491.2 + 69537 0.66 0.819341
Target:  5'- -gAGcCCCCAagUGCuCGgGGCaggcaaaGAGAGCg -3'
miRNA:   3'- gaUCuGGGGU--ACG-GUgCCGg------CUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 2726 0.66 0.810788
Target:  5'- cCUGGugGCCCgGggugGCCACccugcgcuugggGGCCgGAGGGCu -3'
miRNA:   3'- -GAUC--UGGGgUa---CGGUG------------CCGG-CUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 116738 0.66 0.805581
Target:  5'- -gGGACCUCAgUGUCGguuucuccgagcagcCGGCCaGAGAGUu -3'
miRNA:   3'- gaUCUGGGGU-ACGGU---------------GCCGG-CUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 104978 0.66 0.805581
Target:  5'- -gGGGCCgCCGcagauuuggccgggGCCGCGGC-GGGGGCc -3'
miRNA:   3'- gaUCUGG-GGUa-------------CGGUGCCGgCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 105044 0.66 0.805581
Target:  5'- -gGGGCCgCCGcagauuuggccgggGCCGCGGC-GGGGGCc -3'
miRNA:   3'- gaUCUGG-GGUa-------------CGGUGCCGgCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 39447 0.66 0.802079
Target:  5'- -cGGGCCCCAgucGCCugGGugcuggcccCCGcgcaacAGAGCc -3'
miRNA:   3'- gaUCUGGGGUa--CGGugCC---------GGC------UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 25303 0.66 0.802079
Target:  5'- -gAGGUgCCGUGCCGCGuGCCGGucGAGg -3'
miRNA:   3'- gaUCUGgGGUACGGUGC-CGGCU--CUCg -5'
2671 3' -58.3 NC_001491.2 + 9573 0.66 0.802079
Target:  5'- uUGGguGCUCCGaGCCcCGGCUggGGGAGCg -3'
miRNA:   3'- gAUC--UGGGGUaCGGuGCCGG--CUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 89611 0.66 0.79322
Target:  5'- -aGGGCCUCucuguugcugGUGUCugGGuCCGuGAGCc -3'
miRNA:   3'- gaUCUGGGG----------UACGGugCC-GGCuCUCG- -5'
2671 3' -58.3 NC_001491.2 + 27273 0.66 0.79322
Target:  5'- -cGGACUCCucGCCgucgACGGCCaucgGGGAGCc -3'
miRNA:   3'- gaUCUGGGGuaCGG----UGCCGG----CUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 7299 0.66 0.79322
Target:  5'- ----cCCCCAUGCCccgcccACGGUuuuuuuUGAGAGCc -3'
miRNA:   3'- gaucuGGGGUACGG------UGCCG------GCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 35744 0.67 0.78422
Target:  5'- gCUGGAgCCCGacGCCGaGGCCGAGccccuGGUg -3'
miRNA:   3'- -GAUCUgGGGUa-CGGUgCCGGCUC-----UCG- -5'
2671 3' -58.3 NC_001491.2 + 5453 0.67 0.78422
Target:  5'- --uGACCaCC--GCCGgGGUgGAGAGCg -3'
miRNA:   3'- gauCUGG-GGuaCGGUgCCGgCUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.