Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2671 | 3' | -58.3 | NC_001491.2 | + | 144807 | 0.66 | 0.827728 |
Target: 5'- aUAGACUCaacGCgGCGGCCGccAGCu -3' miRNA: 3'- gAUCUGGGguaCGgUGCCGGCucUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 89611 | 0.66 | 0.79322 |
Target: 5'- -aGGGCCUCucuguugcugGUGUCugGGuCCGuGAGCc -3' miRNA: 3'- gaUCUGGGG----------UACGGugCC-GGCuCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 27273 | 0.66 | 0.79322 |
Target: 5'- -cGGACUCCucGCCgucgACGGCCaucgGGGAGCc -3' miRNA: 3'- gaUCUGGGGuaCGG----UGCCGG----CUCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 7299 | 0.66 | 0.79322 |
Target: 5'- ----cCCCCAUGCCccgcccACGGUuuuuuuUGAGAGCc -3' miRNA: 3'- gaucuGGGGUACGG------UGCCG------GCUCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 9573 | 0.66 | 0.802079 |
Target: 5'- uUGGguGCUCCGaGCCcCGGCUggGGGAGCg -3' miRNA: 3'- gAUC--UGGGGUaCGGuGCCGG--CUCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 25303 | 0.66 | 0.802079 |
Target: 5'- -gAGGUgCCGUGCCGCGuGCCGGucGAGg -3' miRNA: 3'- gaUCUGgGGUACGGUGC-CGGCU--CUCg -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 39447 | 0.66 | 0.802079 |
Target: 5'- -cGGGCCCCAgucGCCugGGugcuggcccCCGcgcaacAGAGCc -3' miRNA: 3'- gaUCUGGGGUa--CGGugCC---------GGC------UCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 116738 | 0.66 | 0.805581 |
Target: 5'- -gGGACCUCAgUGUCGguuucuccgagcagcCGGCCaGAGAGUu -3' miRNA: 3'- gaUCUGGGGU-ACGGU---------------GCCGG-CUCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 104978 | 0.66 | 0.805581 |
Target: 5'- -gGGGCCgCCGcagauuuggccgggGCCGCGGC-GGGGGCc -3' miRNA: 3'- gaUCUGG-GGUa-------------CGGUGCCGgCUCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 105044 | 0.66 | 0.805581 |
Target: 5'- -gGGGCCgCCGcagauuuggccgggGCCGCGGC-GGGGGCc -3' miRNA: 3'- gaUCUGG-GGUa-------------CGGUGCCGgCUCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 2726 | 0.66 | 0.810788 |
Target: 5'- cCUGGugGCCCgGggugGCCACccugcgcuugggGGCCgGAGGGCu -3' miRNA: 3'- -GAUC--UGGGgUa---CGGUG------------CCGG-CUCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 42492 | 0.66 | 0.827728 |
Target: 5'- gUGGGCCaggauCCGUaCCACGcGCCGGGccaGGCg -3' miRNA: 3'- gAUCUGG-----GGUAcGGUGC-CGGCUC---UCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 8641 | 0.66 | 0.827728 |
Target: 5'- -cGGGCCCUgcGCCcguaccUGGcCCGGGGGCc -3' miRNA: 3'- gaUCUGGGGuaCGGu-----GCC-GGCUCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 3985 | 0.66 | 0.827728 |
Target: 5'- --uGGCCaCCAggcgGCCGCguguggcagGGCCcAGAGCg -3' miRNA: 3'- gauCUGG-GGUa---CGGUG---------CCGGcUCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 67571 | 0.66 | 0.827728 |
Target: 5'- gCUGGGCCUgGgcGUUugGGgUGAGAGCc -3' miRNA: 3'- -GAUCUGGGgUa-CGGugCCgGCUCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 69537 | 0.66 | 0.819341 |
Target: 5'- -gAGcCCCCAagUGCuCGgGGCaggcaaaGAGAGCg -3' miRNA: 3'- gaUCuGGGGU--ACG-GUgCCGg------CUCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 121397 | 0.66 | 0.819341 |
Target: 5'- --uGACCUCAaggacgugGCCAagcucacgcCGGCCGAGcGCg -3' miRNA: 3'- gauCUGGGGUa-------CGGU---------GCCGGCUCuCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 118554 | 0.66 | 0.819341 |
Target: 5'- -gGGACCCaCAggaUugGGUCGAGuGCa -3' miRNA: 3'- gaUCUGGG-GUacgGugCCGGCUCuCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 35744 | 0.67 | 0.78422 |
Target: 5'- gCUGGAgCCCGacGCCGaGGCCGAGccccuGGUg -3' miRNA: 3'- -GAUCUgGGGUa-CGGUgCCGGCUC-----UCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 5453 | 0.67 | 0.78422 |
Target: 5'- --uGACCaCC--GCCGgGGUgGAGAGCg -3' miRNA: 3'- gauCUGG-GGuaCGGUgCCGgCUCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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