miRNA display CGI


Results 21 - 40 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2671 3' -58.3 NC_001491.2 + 25562 0.67 0.737405
Target:  5'- -aGGuuCCCCccGCCAUcGCCGAGGGg -3'
miRNA:   3'- gaUCu-GGGGuaCGGUGcCGGCUCUCg -5'
2671 3' -58.3 NC_001491.2 + 104494 0.67 0.737405
Target:  5'- uUGGugCUCGUGCaucagaACGGCCGcuuGAGg -3'
miRNA:   3'- gAUCugGGGUACGg-----UGCCGGCu--CUCg -5'
2671 3' -58.3 NC_001491.2 + 32685 0.67 0.737405
Target:  5'- -cAGACCCag-GCaC-CGGCCGAGgaGGCc -3'
miRNA:   3'- gaUCUGGGguaCG-GuGCCGGCUC--UCG- -5'
2671 3' -58.3 NC_001491.2 + 11465 0.67 0.737405
Target:  5'- -cAGACa-CGUGCgCGCGGCUGcGGGGCu -3'
miRNA:   3'- gaUCUGggGUACG-GUGCCGGC-UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 94669 0.67 0.765831
Target:  5'- -cAGACUCCAUGgUGuuuacgaaacuCGGCCcGGGAGCu -3'
miRNA:   3'- gaUCUGGGGUACgGU-----------GCCGG-CUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 31670 0.67 0.771399
Target:  5'- -aGGACCCCcucauccgcgcaGCCagcGCGGCCGaAGAGg -3'
miRNA:   3'- gaUCUGGGGua----------CGG---UGCCGGC-UCUCg -5'
2671 3' -58.3 NC_001491.2 + 10233 0.67 0.775088
Target:  5'- -cGGACCCgCugcGCCGC-GCCGuGGGGCg -3'
miRNA:   3'- gaUCUGGG-Gua-CGGUGcCGGC-UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 33234 0.67 0.780583
Target:  5'- uCUGGGCCC--UGCCacacGCGGCCGccucgguggccauGAGCc -3'
miRNA:   3'- -GAUCUGGGguACGG----UGCCGGCu------------CUCG- -5'
2671 3' -58.3 NC_001491.2 + 35635 0.67 0.783313
Target:  5'- cCUGGcugcGCCCCGUguaccucGCCuGCGGCCGgcgcggcgcuGGGGCc -3'
miRNA:   3'- -GAUC----UGGGGUA-------CGG-UGCCGGC----------UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 5453 0.67 0.78422
Target:  5'- --uGACCaCC--GCCGgGGUgGAGAGCg -3'
miRNA:   3'- gauCUGG-GGuaCGGUgCCGgCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 35744 0.67 0.78422
Target:  5'- gCUGGAgCCCGacGCCGaGGCCGAGccccuGGUg -3'
miRNA:   3'- -GAUCUgGGGUa-CGGUgCCGGCUC-----UCG- -5'
2671 3' -58.3 NC_001491.2 + 27655 0.67 0.78422
Target:  5'- ----cCCCCA-GCCGgGGCUcGGAGCa -3'
miRNA:   3'- gaucuGGGGUaCGGUgCCGGcUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 4660 0.68 0.688368
Target:  5'- -aGGGCUCCG-GCC-CGGCgGAGaAGCc -3'
miRNA:   3'- gaUCUGGGGUaCGGuGCCGgCUC-UCG- -5'
2671 3' -58.3 NC_001491.2 + 2242 0.68 0.708179
Target:  5'- -cGGuuCCCCAggGCCGCcagcagcGCCGAGAGUc -3'
miRNA:   3'- gaUCu-GGGGUa-CGGUGc------CGGCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 28579 0.68 0.708179
Target:  5'- cCUGGcCCCCggGCCagguACGGgCGcAGGGCc -3'
miRNA:   3'- -GAUCuGGGGuaCGG----UGCCgGC-UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 5129 0.68 0.72774
Target:  5'- -gGGACCCUccGCCcggggaGGCCGAGGa- -3'
miRNA:   3'- gaUCUGGGGuaCGGug----CCGGCUCUcg -5'
2671 3' -58.3 NC_001491.2 + 5174 0.69 0.658332
Target:  5'- -gGGACCCCggGCaggucucgguauCGCuGUCGAGGGCg -3'
miRNA:   3'- gaUCUGGGGuaCG------------GUGcCGGCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 20322 0.69 0.657327
Target:  5'- -gAGACCCCGUugugguaGCCGCGGUgGuGGuAGCc -3'
miRNA:   3'- gaUCUGGGGUA-------CGGUGCCGgC-UC-UCG- -5'
2671 3' -58.3 NC_001491.2 + 1569 0.69 0.655315
Target:  5'- --cGGCCCCAgcGCCGCgccGGCCGcaggcgagguacacGGGGCg -3'
miRNA:   3'- gauCUGGGGUa-CGGUG---CCGGC--------------UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 3765 0.69 0.648269
Target:  5'- -cAGACCCgGgUGUacgcuucgcggaCGCGGaCCGAGGGCg -3'
miRNA:   3'- gaUCUGGGgU-ACG------------GUGCC-GGCUCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.