miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2671 3' -58.3 NC_001491.2 + 1569 0.69 0.655315
Target:  5'- --cGGCCCCAgcGCCGCgccGGCCGcaggcgagguacacGGGGCg -3'
miRNA:   3'- gauCUGGGGUa-CGGUG---CCGGC--------------UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 20322 0.69 0.657327
Target:  5'- -gAGACCCCGUugugguaGCCGCGGUgGuGGuAGCc -3'
miRNA:   3'- gaUCUGGGGUA-------CGGUGCCGgC-UC-UCG- -5'
2671 3' -58.3 NC_001491.2 + 5174 0.69 0.658332
Target:  5'- -gGGACCCCggGCaggucucgguauCGCuGUCGAGGGCg -3'
miRNA:   3'- gaUCUGGGGuaCG------------GUGcCGGCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 81146 0.69 0.668376
Target:  5'- -aAGACCUUAUaGUCGCGGUgGAGAugGCg -3'
miRNA:   3'- gaUCUGGGGUA-CGGUGCCGgCUCU--CG- -5'
2671 3' -58.3 NC_001491.2 + 34062 0.7 0.577898
Target:  5'- --cGGCUCCGcgGCCGCGGagGGGAGCc -3'
miRNA:   3'- gauCUGGGGUa-CGGUGCCggCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 81473 0.7 0.577898
Target:  5'- --cGGCCCUcgaagAUGCCGCGcgugcaGCgGAGAGCg -3'
miRNA:   3'- gauCUGGGG-----UACGGUGC------CGgCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 148924 0.7 0.587892
Target:  5'- gCUGGGCCCCAcgcugGCUGCGGggggagaUGGGGGCc -3'
miRNA:   3'- -GAUCUGGGGUa----CGGUGCCg------GCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 78191 0.7 0.587892
Target:  5'- -cAGGCCCauaaacCCAUGGCCGAGAuacGCa -3'
miRNA:   3'- gaUCUGGGguac--GGUGCCGGCUCU---CG- -5'
2671 3' -58.3 NC_001491.2 + 3507 0.7 0.587892
Target:  5'- -aGGGCCgCCGUcuccaGCC-CGGCCGgguuGGAGCa -3'
miRNA:   3'- gaUCUGG-GGUA-----CGGuGCCGGC----UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 1693 0.7 0.607967
Target:  5'- -gAGGCCCUcgGCCugGGCCc---GCa -3'
miRNA:   3'- gaUCUGGGGuaCGGugCCGGcucuCG- -5'
2671 3' -58.3 NC_001491.2 + 4780 0.7 0.607967
Target:  5'- -gAGGCCUCcucCCggGCGGCUGGGAGCg -3'
miRNA:   3'- gaUCUGGGGuacGG--UGCCGGCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 33404 0.72 0.49033
Target:  5'- -cAGGCCgCCGcUGCCGCGGCC-AGccAGCa -3'
miRNA:   3'- gaUCUGG-GGU-ACGGUGCCGGcUC--UCG- -5'
2671 3' -58.3 NC_001491.2 + 3164 0.72 0.45339
Target:  5'- -aAGGCUCCccuCCGCGGCCGcGGAGCc -3'
miRNA:   3'- gaUCUGGGGuacGGUGCCGGC-UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 12101 0.73 0.418016
Target:  5'- gCUGGAguuggcggccCCCCcgGCCGCGGCUgcggcgaagguGGGGGCc -3'
miRNA:   3'- -GAUCU----------GGGGuaCGGUGCCGG-----------CUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 2824 0.73 0.426702
Target:  5'- -gAGGCUCCG-GCCugGGCCGccggcuccaGGGGCu -3'
miRNA:   3'- gaUCUGGGGUaCGGugCCGGC---------UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 119670 0.74 0.376247
Target:  5'- aUAGACUCCAUGaCCAUGGCCauuaacagcgacGGcGAGCg -3'
miRNA:   3'- gAUCUGGGGUAC-GGUGCCGG------------CU-CUCG- -5'
2671 3' -58.3 NC_001491.2 + 25102 0.75 0.34492
Target:  5'- uUGGcCCCCAccuucgccgcaGCCGCGGCCGGGGGg -3'
miRNA:   3'- gAUCuGGGGUa----------CGGUGCCGGCUCUCg -5'
2671 3' -58.3 NC_001491.2 + 33499 0.76 0.281468
Target:  5'- -cGGGCCCCGacgcaaggcUGCCGCGGCCGc-GGCc -3'
miRNA:   3'- gaUCUGGGGU---------ACGGUGCCGGCucUCG- -5'
2671 3' -58.3 NC_001491.2 + 34539 0.77 0.250404
Target:  5'- cCUGGGaCCCAUGCCA--GCCGAGGGCc -3'
miRNA:   3'- -GAUCUgGGGUACGGUgcCGGCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 3707 0.78 0.233158
Target:  5'- cCUGGuCCCCGgagcgGCCGCGGCCGcGGcAGCc -3'
miRNA:   3'- -GAUCuGGGGUa----CGGUGCCGGC-UC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.