Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2671 | 3' | -58.3 | NC_001491.2 | + | 3847 | 0.69 | 0.648269 |
Target: 5'- cCUGGGCCggguagCCG-GCCACGGCgGcGAGUg -3' miRNA: 3'- -GAUCUGG------GGUaCGGUGCCGgCuCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 3765 | 0.69 | 0.648269 |
Target: 5'- -cAGACCCgGgUGUacgcuucgcggaCGCGGaCCGAGGGCg -3' miRNA: 3'- gaUCUGGGgU-ACG------------GUGCC-GGCUCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 1569 | 0.69 | 0.655315 |
Target: 5'- --cGGCCCCAgcGCCGCgccGGCCGcaggcgagguacacGGGGCg -3' miRNA: 3'- gauCUGGGGUa-CGGUG---CCGGC--------------UCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 20322 | 0.69 | 0.657327 |
Target: 5'- -gAGACCCCGUugugguaGCCGCGGUgGuGGuAGCc -3' miRNA: 3'- gaUCUGGGGUA-------CGGUGCCGgC-UC-UCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 5174 | 0.69 | 0.658332 |
Target: 5'- -gGGACCCCggGCaggucucgguauCGCuGUCGAGGGCg -3' miRNA: 3'- gaUCUGGGGuaCG------------GUGcCGGCUCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 81146 | 0.69 | 0.668376 |
Target: 5'- -aAGACCUUAUaGUCGCGGUgGAGAugGCg -3' miRNA: 3'- gaUCUGGGGUA-CGGUGCCGgCUCU--CG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 4660 | 0.68 | 0.688368 |
Target: 5'- -aGGGCUCCG-GCC-CGGCgGAGaAGCc -3' miRNA: 3'- gaUCUGGGGUaCGGuGCCGgCUC-UCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 2242 | 0.68 | 0.708179 |
Target: 5'- -cGGuuCCCCAggGCCGCcagcagcGCCGAGAGUc -3' miRNA: 3'- gaUCu-GGGGUa-CGGUGc------CGGCUCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 28579 | 0.68 | 0.708179 |
Target: 5'- cCUGGcCCCCggGCCagguACGGgCGcAGGGCc -3' miRNA: 3'- -GAUCuGGGGuaCGG----UGCCgGC-UCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 5129 | 0.68 | 0.72774 |
Target: 5'- -gGGACCCUccGCCcggggaGGCCGAGGa- -3' miRNA: 3'- gaUCUGGGGuaCGGug----CCGGCUCUcg -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 11465 | 0.67 | 0.737405 |
Target: 5'- -cAGACa-CGUGCgCGCGGCUGcGGGGCu -3' miRNA: 3'- gaUCUGggGUACG-GUGCCGGC-UCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 104494 | 0.67 | 0.737405 |
Target: 5'- uUGGugCUCGUGCaucagaACGGCCGcuuGAGg -3' miRNA: 3'- gAUCugGGGUACGg-----UGCCGGCu--CUCg -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 25562 | 0.67 | 0.737405 |
Target: 5'- -aGGuuCCCCccGCCAUcGCCGAGGGg -3' miRNA: 3'- gaUCu-GGGGuaCGGUGcCGGCUCUCg -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 32685 | 0.67 | 0.737405 |
Target: 5'- -cAGACCCag-GCaC-CGGCCGAGgaGGCc -3' miRNA: 3'- gaUCUGGGguaCG-GuGCCGGCUC--UCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 32353 | 0.67 | 0.756459 |
Target: 5'- -gGGAUCgCCcgGCCGCuggGGCCGccaccccgaAGAGCu -3' miRNA: 3'- gaUCUGG-GGuaCGGUG---CCGGC---------UCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 94669 | 0.67 | 0.765831 |
Target: 5'- -cAGACUCCAUGgUGuuuacgaaacuCGGCCcGGGAGCu -3' miRNA: 3'- gaUCUGGGGUACgGU-----------GCCGG-CUCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 35025 | 0.67 | 0.765831 |
Target: 5'- -cGG-UCCCAcGCCugGGCCGgcaacuggaccGGGGCc -3' miRNA: 3'- gaUCuGGGGUaCGGugCCGGC-----------UCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 31670 | 0.67 | 0.771399 |
Target: 5'- -aGGACCCCcucauccgcgcaGCCagcGCGGCCGaAGAGg -3' miRNA: 3'- gaUCUGGGGua----------CGG---UGCCGGC-UCUCg -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 10233 | 0.67 | 0.775088 |
Target: 5'- -cGGACCCgCugcGCCGC-GCCGuGGGGCg -3' miRNA: 3'- gaUCUGGG-Gua-CGGUGcCGGC-UCUCG- -5' |
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2671 | 3' | -58.3 | NC_001491.2 | + | 33234 | 0.67 | 0.780583 |
Target: 5'- uCUGGGCCC--UGCCacacGCGGCCGccucgguggccauGAGCc -3' miRNA: 3'- -GAUCUGGGguACGG----UGCCGGCu------------CUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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