miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2671 3' -58.3 NC_001491.2 + 1434 0.69 0.628112
Target:  5'- --cGACCCgCGggGCUcgGCGGCgGGGAGCc -3'
miRNA:   3'- gauCUGGG-GUa-CGG--UGCCGgCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 1569 0.69 0.655315
Target:  5'- --cGGCCCCAgcGCCGCgccGGCCGcaggcgagguacacGGGGCg -3'
miRNA:   3'- gauCUGGGGUa-CGGUG---CCGGC--------------UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 1693 0.7 0.607967
Target:  5'- -gAGGCCCUcgGCCugGGCCc---GCa -3'
miRNA:   3'- gaUCUGGGGuaCGGugCCGGcucuCG- -5'
2671 3' -58.3 NC_001491.2 + 2242 0.68 0.708179
Target:  5'- -cGGuuCCCCAggGCCGCcagcagcGCCGAGAGUc -3'
miRNA:   3'- gaUCu-GGGGUa-CGGUGc------CGGCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 2726 0.66 0.810788
Target:  5'- cCUGGugGCCCgGggugGCCACccugcgcuugggGGCCgGAGGGCu -3'
miRNA:   3'- -GAUC--UGGGgUa---CGGUG------------CCGG-CUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 2824 0.73 0.426702
Target:  5'- -gAGGCUCCG-GCCugGGCCGccggcuccaGGGGCu -3'
miRNA:   3'- gaUCUGGGGUaCGGugCCGGC---------UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 3164 0.72 0.45339
Target:  5'- -aAGGCUCCccuCCGCGGCCGcGGAGCc -3'
miRNA:   3'- gaUCUGGGGuacGGUGCCGGC-UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 3507 0.7 0.587892
Target:  5'- -aGGGCCgCCGUcuccaGCC-CGGCCGgguuGGAGCa -3'
miRNA:   3'- gaUCUGG-GGUA-----CGGuGCCGGC----UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 3707 0.78 0.233158
Target:  5'- cCUGGuCCCCGgagcgGCCGCGGCCGcGGcAGCc -3'
miRNA:   3'- -GAUCuGGGGUa----CGGUGCCGGC-UC-UCG- -5'
2671 3' -58.3 NC_001491.2 + 3765 0.69 0.648269
Target:  5'- -cAGACCCgGgUGUacgcuucgcggaCGCGGaCCGAGGGCg -3'
miRNA:   3'- gaUCUGGGgU-ACG------------GUGCC-GGCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 3847 0.69 0.648269
Target:  5'- cCUGGGCCggguagCCG-GCCACGGCgGcGAGUg -3'
miRNA:   3'- -GAUCUGG------GGUaCGGUGCCGgCuCUCG- -5'
2671 3' -58.3 NC_001491.2 + 3985 0.66 0.827728
Target:  5'- --uGGCCaCCAggcgGCCGCguguggcagGGCCcAGAGCg -3'
miRNA:   3'- gauCUGG-GGUa---CGGUG---------CCGGcUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 4660 0.68 0.688368
Target:  5'- -aGGGCUCCG-GCC-CGGCgGAGaAGCc -3'
miRNA:   3'- gaUCUGGGGUaCGGuGCCGgCUC-UCG- -5'
2671 3' -58.3 NC_001491.2 + 4780 0.7 0.607967
Target:  5'- -gAGGCCUCcucCCggGCGGCUGGGAGCg -3'
miRNA:   3'- gaUCUGGGGuacGG--UGCCGGCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 5129 0.68 0.72774
Target:  5'- -gGGACCCUccGCCcggggaGGCCGAGGa- -3'
miRNA:   3'- gaUCUGGGGuaCGGug----CCGGCUCUcg -5'
2671 3' -58.3 NC_001491.2 + 5174 0.69 0.658332
Target:  5'- -gGGACCCCggGCaggucucgguauCGCuGUCGAGGGCg -3'
miRNA:   3'- gaUCUGGGGuaCG------------GUGcCGGCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 5373 0.85 0.080552
Target:  5'- -aGGACCgCCGcUGCCgGCGGCCGAGGGCg -3'
miRNA:   3'- gaUCUGG-GGU-ACGG-UGCCGGCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 5453 0.67 0.78422
Target:  5'- --uGACCaCC--GCCGgGGUgGAGAGCg -3'
miRNA:   3'- gauCUGG-GGuaCGGUgCCGgCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 7299 0.66 0.79322
Target:  5'- ----cCCCCAUGCCccgcccACGGUuuuuuuUGAGAGCc -3'
miRNA:   3'- gaucuGGGGUACGG------UGCCG------GCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 8641 0.66 0.827728
Target:  5'- -cGGGCCCUgcGCCcguaccUGGcCCGGGGGCc -3'
miRNA:   3'- gaUCUGGGGuaCGGu-----GCC-GGCUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.