miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2671 3' -58.3 NC_001491.2 + 35635 0.67 0.783313
Target:  5'- cCUGGcugcGCCCCGUguaccucGCCuGCGGCCGgcgcggcgcuGGGGCc -3'
miRNA:   3'- -GAUC----UGGGGUA-------CGG-UGCCGGC----------UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 35025 0.67 0.765831
Target:  5'- -cGG-UCCCAcGCCugGGCCGgcaacuggaccGGGGCc -3'
miRNA:   3'- gaUCuGGGGUaCGGugCCGGC-----------UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 34539 0.77 0.250404
Target:  5'- cCUGGGaCCCAUGCCA--GCCGAGGGCc -3'
miRNA:   3'- -GAUCUgGGGUACGGUgcCGGCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 34062 0.7 0.577898
Target:  5'- --cGGCUCCGcgGCCGCGGagGGGAGCc -3'
miRNA:   3'- gauCUGGGGUa-CGGUGCCggCUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 33499 0.76 0.281468
Target:  5'- -cGGGCCCCGacgcaaggcUGCCGCGGCCGc-GGCc -3'
miRNA:   3'- gaUCUGGGGU---------ACGGUGCCGGCucUCG- -5'
2671 3' -58.3 NC_001491.2 + 33404 0.72 0.49033
Target:  5'- -cAGGCCgCCGcUGCCGCGGCC-AGccAGCa -3'
miRNA:   3'- gaUCUGG-GGU-ACGGUGCCGGcUC--UCG- -5'
2671 3' -58.3 NC_001491.2 + 33234 0.67 0.780583
Target:  5'- uCUGGGCCC--UGCCacacGCGGCCGccucgguggccauGAGCc -3'
miRNA:   3'- -GAUCUGGGguACGG----UGCCGGCu------------CUCG- -5'
2671 3' -58.3 NC_001491.2 + 33207 0.69 0.638193
Target:  5'- -gGGACgCCAUG--GCGGCCGGGAacGCg -3'
miRNA:   3'- gaUCUGgGGUACggUGCCGGCUCU--CG- -5'
2671 3' -58.3 NC_001491.2 + 32685 0.67 0.737405
Target:  5'- -cAGACCCag-GCaC-CGGCCGAGgaGGCc -3'
miRNA:   3'- gaUCUGGGguaCG-GuGCCGGCUC--UCG- -5'
2671 3' -58.3 NC_001491.2 + 32353 0.67 0.756459
Target:  5'- -gGGAUCgCCcgGCCGCuggGGCCGccaccccgaAGAGCu -3'
miRNA:   3'- gaUCUGG-GGuaCGGUG---CCGGC---------UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 31670 0.67 0.771399
Target:  5'- -aGGACCCCcucauccgcgcaGCCagcGCGGCCGaAGAGg -3'
miRNA:   3'- gaUCUGGGGua----------CGG---UGCCGGC-UCUCg -5'
2671 3' -58.3 NC_001491.2 + 28579 0.68 0.708179
Target:  5'- cCUGGcCCCCggGCCagguACGGgCGcAGGGCc -3'
miRNA:   3'- -GAUCuGGGGuaCGG----UGCCgGC-UCUCG- -5'
2671 3' -58.3 NC_001491.2 + 27655 0.67 0.78422
Target:  5'- ----cCCCCA-GCCGgGGCUcGGAGCa -3'
miRNA:   3'- gaucuGGGGUaCGGUgCCGGcUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 27273 0.66 0.79322
Target:  5'- -cGGACUCCucGCCgucgACGGCCaucgGGGAGCc -3'
miRNA:   3'- gaUCUGGGGuaCGG----UGCCGG----CUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 25562 0.67 0.737405
Target:  5'- -aGGuuCCCCccGCCAUcGCCGAGGGg -3'
miRNA:   3'- gaUCu-GGGGuaCGGUGcCGGCUCUCg -5'
2671 3' -58.3 NC_001491.2 + 25303 0.66 0.802079
Target:  5'- -gAGGUgCCGUGCCGCGuGCCGGucGAGg -3'
miRNA:   3'- gaUCUGgGGUACGGUGC-CGGCU--CUCg -5'
2671 3' -58.3 NC_001491.2 + 25102 0.75 0.34492
Target:  5'- uUGGcCCCCAccuucgccgcaGCCGCGGCCGGGGGg -3'
miRNA:   3'- gAUCuGGGGUa----------CGGUGCCGGCUCUCg -5'
2671 3' -58.3 NC_001491.2 + 20322 0.69 0.657327
Target:  5'- -gAGACCCCGUugugguaGCCGCGGUgGuGGuAGCc -3'
miRNA:   3'- gaUCUGGGGUA-------CGGUGCCGgC-UC-UCG- -5'
2671 3' -58.3 NC_001491.2 + 12101 0.73 0.418016
Target:  5'- gCUGGAguuggcggccCCCCcgGCCGCGGCUgcggcgaagguGGGGGCc -3'
miRNA:   3'- -GAUCU----------GGGGuaCGGUGCCGG-----------CUCUCG- -5'
2671 3' -58.3 NC_001491.2 + 11465 0.67 0.737405
Target:  5'- -cAGACa-CGUGCgCGCGGCUGcGGGGCu -3'
miRNA:   3'- gaUCUGggGUACG-GUGCCGGC-UCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.