miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2671 5' -53.8 NC_001491.2 + 134467 0.66 0.949895
Target:  5'- cGAGGUcUGGGUgcuugUGGCUgUGCGGGGa- -3'
miRNA:   3'- -UUUCAaACCCG-----ACUGGaAUGCCCCcg -5'
2671 5' -53.8 NC_001491.2 + 71151 0.67 0.930749
Target:  5'- uAGGUgcgaGGGuCUGGCUgucCGGGGGUu -3'
miRNA:   3'- uUUCAaa--CCC-GACUGGaauGCCCCCG- -5'
2671 5' -53.8 NC_001491.2 + 105087 0.67 0.925334
Target:  5'- -cAGaUUUGGcCggGGCCgcgGCGGGGGCc -3'
miRNA:   3'- uuUC-AAACCcGa-CUGGaa-UGCCCCCG- -5'
2671 5' -53.8 NC_001491.2 + 105054 0.67 0.925334
Target:  5'- -cAGaUUUGGcCggGGCCgcgGCGGGGGCc -3'
miRNA:   3'- uuUC-AAACCcGa-CUGGaa-UGCCCCCG- -5'
2671 5' -53.8 NC_001491.2 + 105021 0.67 0.925334
Target:  5'- -cAGaUUUGGcCggGGCCgcgGCGGGGGCc -3'
miRNA:   3'- uuUC-AAACCcGa-CUGGaa-UGCCCCCG- -5'
2671 5' -53.8 NC_001491.2 + 104988 0.67 0.925334
Target:  5'- -cAGaUUUGGcCggGGCCgcgGCGGGGGCc -3'
miRNA:   3'- uuUC-AAACCcGa-CUGGaa-UGCCCCCG- -5'
2671 5' -53.8 NC_001491.2 + 97622 0.67 0.919667
Target:  5'- cAAGUUugUGGGcCUGACg-UACgaGGGGGUa -3'
miRNA:   3'- uUUCAA--ACCC-GACUGgaAUG--CCCCCG- -5'
2671 5' -53.8 NC_001491.2 + 148904 0.67 0.919667
Target:  5'- cGAGUUgggaaaucuagUGGGCUgGGCCccacgcuggcUGCGGGGGg -3'
miRNA:   3'- uUUCAA-----------ACCCGA-CUGGa---------AUGCCCCCg -5'
2671 5' -53.8 NC_001491.2 + 12154 0.68 0.901159
Target:  5'- cGAGGUggggcGGGUUGGCaUUGCGGcGGCg -3'
miRNA:   3'- -UUUCAaa---CCCGACUGgAAUGCCcCCG- -5'
2671 5' -53.8 NC_001491.2 + 10906 0.68 0.887587
Target:  5'- ------aGGGgaGGCCgaGCGGGGGa -3'
miRNA:   3'- uuucaaaCCCgaCUGGaaUGCCCCCg -5'
2671 5' -53.8 NC_001491.2 + 10933 0.68 0.887587
Target:  5'- ------aGGGgaGGCCgaGCGGGGGa -3'
miRNA:   3'- uuucaaaCCCgaCUGGaaUGCCCCCg -5'
2671 5' -53.8 NC_001491.2 + 10986 0.68 0.887587
Target:  5'- ------aGGGgaGGCCgaGCGGGGGa -3'
miRNA:   3'- uuucaaaCCCgaCUGGaaUGCCCCCg -5'
2671 5' -53.8 NC_001491.2 + 11013 0.68 0.887587
Target:  5'- ------aGGGgaGGCCgaGCGGGGGa -3'
miRNA:   3'- uuucaaaCCCgaCUGGaaUGCCCCCg -5'
2671 5' -53.8 NC_001491.2 + 11040 0.68 0.887587
Target:  5'- ------aGGGgaGGCCgaGCGGGGGa -3'
miRNA:   3'- uuucaaaCCCgaCUGGaaUGCCCCCg -5'
2671 5' -53.8 NC_001491.2 + 11067 0.68 0.887587
Target:  5'- ------aGGGgaGGCCgaGCGGGGGa -3'
miRNA:   3'- uuucaaaCCCgaCUGGaaUGCCCCCg -5'
2671 5' -53.8 NC_001491.2 + 11094 0.68 0.887587
Target:  5'- ------aGGGgaGGCCgaGCGGGGGa -3'
miRNA:   3'- uuucaaaCCCgaCUGGaaUGCCCCCg -5'
2671 5' -53.8 NC_001491.2 + 11121 0.68 0.887587
Target:  5'- ------aGGGgaGGCCgaGCGGGGGa -3'
miRNA:   3'- uuucaaaCCCgaCUGGaaUGCCCCCg -5'
2671 5' -53.8 NC_001491.2 + 11148 0.68 0.887587
Target:  5'- ------aGGGgaGGCCgaGCGGGGGa -3'
miRNA:   3'- uuucaaaCCCgaCUGGaaUGCCCCCg -5'
2671 5' -53.8 NC_001491.2 + 11175 0.68 0.887587
Target:  5'- ------aGGGgaGGCCgaGCGGGGGa -3'
miRNA:   3'- uuucaaaCCCgaCUGGaaUGCCCCCg -5'
2671 5' -53.8 NC_001491.2 + 11202 0.68 0.887587
Target:  5'- ------aGGGgaGGCCgaGCGGGGGa -3'
miRNA:   3'- uuucaaaCCCgaCUGGaaUGCCCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.