miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26710 3' -58.4 NC_005808.1 + 23748 0.66 0.502361
Target:  5'- gCAgcAGcgCCAUG-CCGGCGccacCGGGCCGa -3'
miRNA:   3'- aGU--UCa-GGUACuGGCCGCc---GCUCGGC- -5'
26710 3' -58.4 NC_005808.1 + 19246 0.66 0.502361
Target:  5'- gUCAGGcCCAUGAacuucUCGGCGuCGAuGCUGg -3'
miRNA:   3'- -AGUUCaGGUACU-----GGCCGCcGCU-CGGC- -5'
26710 3' -58.4 NC_005808.1 + 1033 0.66 0.461823
Target:  5'- -gAAGgCCAcGGCCGGCGGC-AGCa- -3'
miRNA:   3'- agUUCaGGUaCUGGCCGCCGcUCGgc -5'
26710 3' -58.4 NC_005808.1 + 12465 0.67 0.43258
Target:  5'- --cGGUgCA-GGCCGGCGGCGuguucuggcgcGGCCu -3'
miRNA:   3'- aguUCAgGUaCUGGCCGCCGC-----------UCGGc -5'
26710 3' -58.4 NC_005808.1 + 24130 0.67 0.43258
Target:  5'- gUCGuAGUCCA--GCCGGCuGCGcGCCu -3'
miRNA:   3'- -AGU-UCAGGUacUGGCCGcCGCuCGGc -5'
26710 3' -58.4 NC_005808.1 + 1751 0.67 0.423074
Target:  5'- cCGGGcggUCAUGGCCGGCcugcgccuGGCGcgucgGGCCGa -3'
miRNA:   3'- aGUUCa--GGUACUGGCCG--------CCGC-----UCGGC- -5'
26710 3' -58.4 NC_005808.1 + 29040 0.67 0.423074
Target:  5'- cCAGGUCgAUacccACCGGCGGCucguaGGCCa -3'
miRNA:   3'- aGUUCAGgUAc---UGGCCGCCGc----UCGGc -5'
26710 3' -58.4 NC_005808.1 + 17277 0.67 0.413695
Target:  5'- aCAA-UCCcgGcgacgagcGCCGGUGGCaGGGCCGg -3'
miRNA:   3'- aGUUcAGGuaC--------UGGCCGCCG-CUCGGC- -5'
26710 3' -58.4 NC_005808.1 + 24527 0.67 0.409979
Target:  5'- aUCAcGUCCAgguggaUGACCGcguggucgcgcagcGCGGCGAuggcgagGCCGg -3'
miRNA:   3'- -AGUuCAGGU------ACUGGC--------------CGCCGCU-------CGGC- -5'
26710 3' -58.4 NC_005808.1 + 648 0.68 0.383674
Target:  5'- gUCGAGUCgGUGcccaaggcuguaGCCaccaggccgccuacGGCGGCGccGGCCGg -3'
miRNA:   3'- -AGUUCAGgUAC------------UGG--------------CCGCCGC--UCGGC- -5'
26710 3' -58.4 NC_005808.1 + 28391 0.68 0.377494
Target:  5'- uUCcAGUUCGacGCCGGCGGCGcggcGCCa -3'
miRNA:   3'- -AGuUCAGGUacUGGCCGCCGCu---CGGc -5'
26710 3' -58.4 NC_005808.1 + 505 0.69 0.332919
Target:  5'- aCAAGUCCAcguugggccaucgcUGGCCGaauaccucggacGUGcGCGGGCCGc -3'
miRNA:   3'- aGUUCAGGU--------------ACUGGC------------CGC-CGCUCGGC- -5'
26710 3' -58.4 NC_005808.1 + 41107 0.69 0.327328
Target:  5'- aUCAAGUaCGUGAgCCGGUGGCGGaagaagaacggcGUCGa -3'
miRNA:   3'- -AGUUCAgGUACU-GGCCGCCGCU------------CGGC- -5'
26710 3' -58.4 NC_005808.1 + 19245 0.69 0.327328
Target:  5'- -----aCCGUGuucAUCGGCGGCGAGgCCGu -3'
miRNA:   3'- aguucaGGUAC---UGGCCGCCGCUC-GGC- -5'
26710 3' -58.4 NC_005808.1 + 26780 0.71 0.255058
Target:  5'- uUCGAGUCCu--GCgCGGUGGUG-GCCGa -3'
miRNA:   3'- -AGUUCAGGuacUG-GCCGCCGCuCGGC- -5'
26710 3' -58.4 NC_005808.1 + 1664 0.71 0.253106
Target:  5'- gCAGGUCUugcaccucgcgcuugGACUcGCGGCGAGCCa -3'
miRNA:   3'- aGUUCAGGua-------------CUGGcCGCCGCUCGGc -5'
26710 3' -58.4 NC_005808.1 + 1868 0.72 0.207112
Target:  5'- gCAGGUucagcCCGUGGCCGGCG-CuGGCCGg -3'
miRNA:   3'- aGUUCA-----GGUACUGGCCGCcGcUCGGC- -5'
26710 3' -58.4 NC_005808.1 + 11409 0.73 0.181261
Target:  5'- -aGGGUCU-UGAgCaGCGGCGAGCCGg -3'
miRNA:   3'- agUUCAGGuACUgGcCGCCGCUCGGC- -5'
26710 3' -58.4 NC_005808.1 + 18437 0.74 0.154045
Target:  5'- cCGAGUCCugcaccgaaaacGUGacggucgcggcGCCGGCGGCGucGGCCGa -3'
miRNA:   3'- aGUUCAGG------------UAC-----------UGGCCGCCGC--UCGGC- -5'
26710 3' -58.4 NC_005808.1 + 14880 1.08 0.000422
Target:  5'- aUCAAGUCCAUGACCGGCGGCGAGCCGc -3'
miRNA:   3'- -AGUUCAGGUACUGGCCGCCGCUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.