Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26710 | 3' | -58.4 | NC_005808.1 | + | 23748 | 0.66 | 0.502361 |
Target: 5'- gCAgcAGcgCCAUG-CCGGCGccacCGGGCCGa -3' miRNA: 3'- aGU--UCa-GGUACuGGCCGCc---GCUCGGC- -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 19246 | 0.66 | 0.502361 |
Target: 5'- gUCAGGcCCAUGAacuucUCGGCGuCGAuGCUGg -3' miRNA: 3'- -AGUUCaGGUACU-----GGCCGCcGCU-CGGC- -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 1033 | 0.66 | 0.461823 |
Target: 5'- -gAAGgCCAcGGCCGGCGGC-AGCa- -3' miRNA: 3'- agUUCaGGUaCUGGCCGCCGcUCGgc -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 12465 | 0.67 | 0.43258 |
Target: 5'- --cGGUgCA-GGCCGGCGGCGuguucuggcgcGGCCu -3' miRNA: 3'- aguUCAgGUaCUGGCCGCCGC-----------UCGGc -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 24130 | 0.67 | 0.43258 |
Target: 5'- gUCGuAGUCCA--GCCGGCuGCGcGCCu -3' miRNA: 3'- -AGU-UCAGGUacUGGCCGcCGCuCGGc -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 29040 | 0.67 | 0.423074 |
Target: 5'- cCAGGUCgAUacccACCGGCGGCucguaGGCCa -3' miRNA: 3'- aGUUCAGgUAc---UGGCCGCCGc----UCGGc -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 1751 | 0.67 | 0.423074 |
Target: 5'- cCGGGcggUCAUGGCCGGCcugcgccuGGCGcgucgGGCCGa -3' miRNA: 3'- aGUUCa--GGUACUGGCCG--------CCGC-----UCGGC- -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 17277 | 0.67 | 0.413695 |
Target: 5'- aCAA-UCCcgGcgacgagcGCCGGUGGCaGGGCCGg -3' miRNA: 3'- aGUUcAGGuaC--------UGGCCGCCG-CUCGGC- -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 24527 | 0.67 | 0.409979 |
Target: 5'- aUCAcGUCCAgguggaUGACCGcguggucgcgcagcGCGGCGAuggcgagGCCGg -3' miRNA: 3'- -AGUuCAGGU------ACUGGC--------------CGCCGCU-------CGGC- -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 648 | 0.68 | 0.383674 |
Target: 5'- gUCGAGUCgGUGcccaaggcuguaGCCaccaggccgccuacGGCGGCGccGGCCGg -3' miRNA: 3'- -AGUUCAGgUAC------------UGG--------------CCGCCGC--UCGGC- -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 28391 | 0.68 | 0.377494 |
Target: 5'- uUCcAGUUCGacGCCGGCGGCGcggcGCCa -3' miRNA: 3'- -AGuUCAGGUacUGGCCGCCGCu---CGGc -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 505 | 0.69 | 0.332919 |
Target: 5'- aCAAGUCCAcguugggccaucgcUGGCCGaauaccucggacGUGcGCGGGCCGc -3' miRNA: 3'- aGUUCAGGU--------------ACUGGC------------CGC-CGCUCGGC- -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 41107 | 0.69 | 0.327328 |
Target: 5'- aUCAAGUaCGUGAgCCGGUGGCGGaagaagaacggcGUCGa -3' miRNA: 3'- -AGUUCAgGUACU-GGCCGCCGCU------------CGGC- -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 19245 | 0.69 | 0.327328 |
Target: 5'- -----aCCGUGuucAUCGGCGGCGAGgCCGu -3' miRNA: 3'- aguucaGGUAC---UGGCCGCCGCUC-GGC- -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 26780 | 0.71 | 0.255058 |
Target: 5'- uUCGAGUCCu--GCgCGGUGGUG-GCCGa -3' miRNA: 3'- -AGUUCAGGuacUG-GCCGCCGCuCGGC- -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 1664 | 0.71 | 0.253106 |
Target: 5'- gCAGGUCUugcaccucgcgcuugGACUcGCGGCGAGCCa -3' miRNA: 3'- aGUUCAGGua-------------CUGGcCGCCGCUCGGc -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 1868 | 0.72 | 0.207112 |
Target: 5'- gCAGGUucagcCCGUGGCCGGCG-CuGGCCGg -3' miRNA: 3'- aGUUCA-----GGUACUGGCCGCcGcUCGGC- -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 11409 | 0.73 | 0.181261 |
Target: 5'- -aGGGUCU-UGAgCaGCGGCGAGCCGg -3' miRNA: 3'- agUUCAGGuACUgGcCGCCGCUCGGC- -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 18437 | 0.74 | 0.154045 |
Target: 5'- cCGAGUCCugcaccgaaaacGUGacggucgcggcGCCGGCGGCGucGGCCGa -3' miRNA: 3'- aGUUCAGG------------UAC-----------UGGCCGCCGC--UCGGC- -5' |
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26710 | 3' | -58.4 | NC_005808.1 | + | 14880 | 1.08 | 0.000422 |
Target: 5'- aUCAAGUCCAUGACCGGCGGCGAGCCGc -3' miRNA: 3'- -AGUUCAGGUACUGGCCGCCGCUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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