Results 21 - 24 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26710 | 5' | -55 | NC_005808.1 | + | 7152 | 0.71 | 0.357964 |
Target: 5'- uGCGGCCUGgaugaCCAGGGCCG-GGc -3' miRNA: 3'- gCGCCGGACauaa-GGUUCUGGUgCCa -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 18587 | 0.71 | 0.357964 |
Target: 5'- uGaCGGCCUGgccgUCCGAGACUugGa- -3' miRNA: 3'- gC-GCCGGACaua-AGGUUCUGGugCca -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 29600 | 0.71 | 0.349343 |
Target: 5'- gCGCGGCCUGUA---CGAGaACgGCGGg -3' miRNA: 3'- -GCGCCGGACAUaagGUUC-UGgUGCCa -5' |
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26710 | 5' | -55 | NC_005808.1 | + | 14915 | 1.08 | 0.000895 |
Target: 5'- gCGCGGCCUGUAUUCCAAGACCACGGUg -3' miRNA: 3'- -GCGCCGGACAUAAGGUUCUGGUGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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