miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26711 3' -58.5 NC_005808.1 + 33382 0.68 0.387033
Target:  5'- gGCgCGCCGcAGaACGUGCgccgCGCCG-CCg -3'
miRNA:   3'- -CGgGUGGC-UCcUGCACGa---GCGGUaGG- -5'
26711 3' -58.5 NC_005808.1 + 31738 0.68 0.387033
Target:  5'- cGCCgACCGAagccacgcaGGGCcUGCUCGaCCA-CCu -3'
miRNA:   3'- -CGGgUGGCU---------CCUGcACGAGC-GGUaGG- -5'
26711 3' -58.5 NC_005808.1 + 14985 0.68 0.387033
Target:  5'- gGCCCAUCGucaAGGGCGacgaccaCGCCAUCUg -3'
miRNA:   3'- -CGGGUGGC---UCCUGCacga---GCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 42354 0.68 0.395959
Target:  5'- gGCaCCACCGGGGAaacccaGCgCGCCAaugCCg -3'
miRNA:   3'- -CG-GGUGGCUCCUgca---CGaGCGGUa--GG- -5'
26711 3' -58.5 NC_005808.1 + 24985 0.68 0.394164
Target:  5'- cGCCCACCcaccagcacaaaGGGGGCcgacgacagcgGgUUGCCGUCCg -3'
miRNA:   3'- -CGGGUGG------------CUCCUGca---------CgAGCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 33876 0.68 0.39596
Target:  5'- cGCCCGCCGGGcacaucuuCGUGUUCGgCAgcaaUCUg -3'
miRNA:   3'- -CGGGUGGCUCcu------GCACGAGCgGU----AGG- -5'
26711 3' -58.5 NC_005808.1 + 13681 0.68 0.405017
Target:  5'- cGCgCACCguGAGGAUGUcgUCGgCGUCCa -3'
miRNA:   3'- -CGgGUGG--CUCCUGCAcgAGCgGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 23920 0.69 0.341989
Target:  5'- gGCCCgcgugguguaacagGCCGGGGGCGggcGC-CGCCcccgaucacgaAUCCa -3'
miRNA:   3'- -CGGG--------------UGGCUCCUGCa--CGaGCGG-----------UAGG- -5'
26711 3' -58.5 NC_005808.1 + 18929 0.69 0.33633
Target:  5'- gGCCCgACCGAGGGuCGccuggugcaguUGCUgcCGCCG-CCg -3'
miRNA:   3'- -CGGG-UGGCUCCU-GC-----------ACGA--GCGGUaGG- -5'
26711 3' -58.5 NC_005808.1 + 21886 0.69 0.312857
Target:  5'- gGCCUGauGGGGugccCGUGcCUCGUCGUCCa -3'
miRNA:   3'- -CGGGUggCUCCu---GCAC-GAGCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 13853 0.69 0.344435
Target:  5'- aGCgCACCGcgcuGGACGaUGCcaaggCGCuCAUCCu -3'
miRNA:   3'- -CGgGUGGCu---CCUGC-ACGa----GCG-GUAGG- -5'
26711 3' -58.5 NC_005808.1 + 3902 0.69 0.323654
Target:  5'- cGCCgAacuugguagauuucuUCGGGGACGcGCU-GCCGUCCg -3'
miRNA:   3'- -CGGgU---------------GGCUCCUGCaCGAgCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 27704 0.69 0.344435
Target:  5'- cGCgCGCCGGcaGCG-GCUCGCCG-CCg -3'
miRNA:   3'- -CGgGUGGCUccUGCaCGAGCGGUaGG- -5'
26711 3' -58.5 NC_005808.1 + 27878 0.69 0.35268
Target:  5'- cGCUCGCCaucuuGGCGUGCUCGCCcagcacGUCg -3'
miRNA:   3'- -CGGGUGGcuc--CUGCACGAGCGG------UAGg -5'
26711 3' -58.5 NC_005808.1 + 38389 0.69 0.33633
Target:  5'- aGCCgcaaGCCGc-GACGUGCUCGCgG-CCa -3'
miRNA:   3'- -CGGg---UGGCucCUGCACGAGCGgUaGG- -5'
26711 3' -58.5 NC_005808.1 + 5217 0.7 0.29791
Target:  5'- uGCCCACguCGAGGAUGuUGgaCGCCAc-- -3'
miRNA:   3'- -CGGGUG--GCUCCUGC-ACgaGCGGUagg -5'
26711 3' -58.5 NC_005808.1 + 13504 0.7 0.305313
Target:  5'- cGCCUuugGgCGAGGuaaGCG-GUUUGCCGUCCg -3'
miRNA:   3'- -CGGG---UgGCUCC---UGCaCGAGCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 13564 0.7 0.305313
Target:  5'- uGCCCACgGc-GAUGUugaacgcgcGCUCGCCAUCg -3'
miRNA:   3'- -CGGGUGgCucCUGCA---------CGAGCGGUAGg -5'
26711 3' -58.5 NC_005808.1 + 27236 0.7 0.276538
Target:  5'- cGCUCACCGAGGugaaGCagCGCaCGUCCg -3'
miRNA:   3'- -CGGGUGGCUCCugcaCGa-GCG-GUAGG- -5'
26711 3' -58.5 NC_005808.1 + 40893 0.7 0.29791
Target:  5'- -gCCACCGAcacgauGGACGaauugguaugGCUCGCCgcgaGUCCa -3'
miRNA:   3'- cgGGUGGCU------CCUGCa---------CGAGCGG----UAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.