miRNA display CGI


Results 41 - 51 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26711 3' -58.5 NC_005808.1 + 27236 0.7 0.276538
Target:  5'- cGCUCACCGAGGugaaGCagCGCaCGUCCg -3'
miRNA:   3'- -CGGGUGGCUCCugcaCGa-GCG-GUAGG- -5'
26711 3' -58.5 NC_005808.1 + 25441 0.7 0.272413
Target:  5'- gGCgCAUCGAcGACGUGaaguaccaaagcggcCUCGCCAUCUg -3'
miRNA:   3'- -CGgGUGGCUcCUGCAC---------------GAGCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 29941 0.71 0.24997
Target:  5'- gGCUUGCCagucAGGugGUGCUUGUCGUCg -3'
miRNA:   3'- -CGGGUGGc---UCCugCACGAGCGGUAGg -5'
26711 3' -58.5 NC_005808.1 + 31901 0.71 0.231454
Target:  5'- aUCgGCCGAGGcCGUGCgcgcUGCCGUCa -3'
miRNA:   3'- cGGgUGGCUCCuGCACGa---GCGGUAGg -5'
26711 3' -58.5 NC_005808.1 + 6531 0.71 0.245543
Target:  5'- cGCCCACaguucgaugcuggCGuuGACGUagcagcccgcguaggGCUUGCCAUCCg -3'
miRNA:   3'- -CGGGUG-------------GCucCUGCA---------------CGAGCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 32461 0.71 0.243665
Target:  5'- cGCCCccuacuGCCGAGGugGggGCggccgaugCGCCcgaAUCCa -3'
miRNA:   3'- -CGGG------UGGCUCCugCa-CGa-------GCGG---UAGG- -5'
26711 3' -58.5 NC_005808.1 + 18028 0.72 0.203173
Target:  5'- gGCCCgACCGuGGcCG-GcCUCGCCAUCg -3'
miRNA:   3'- -CGGG-UGGCuCCuGCaC-GAGCGGUAGg -5'
26711 3' -58.5 NC_005808.1 + 32674 0.72 0.208579
Target:  5'- uGCCCGacgugaagcCCGAGcaguucgccGACGUGCUCGCCGc-- -3'
miRNA:   3'- -CGGGU---------GGCUC---------CUGCACGAGCGGUagg -5'
26711 3' -58.5 NC_005808.1 + 33276 0.76 0.10877
Target:  5'- cGCCCGCCGcgccGACGUGCgcCGCCAggucgCCg -3'
miRNA:   3'- -CGGGUGGCuc--CUGCACGa-GCGGUa----GG- -5'
26711 3' -58.5 NC_005808.1 + 328 0.8 0.058362
Target:  5'- uGCCgUACCGGGGgucgugccacACGUGCUCGCCGaCCa -3'
miRNA:   3'- -CGG-GUGGCUCC----------UGCACGAGCGGUaGG- -5'
26711 3' -58.5 NC_005808.1 + 14635 1.12 0.000227
Target:  5'- aGCCCACCGAGGACGUGCUCGCCAUCCc -3'
miRNA:   3'- -CGGGUGGCUCCUGCACGAGCGGUAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.