Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26711 | 3' | -58.5 | NC_005808.1 | + | 23920 | 0.69 | 0.341989 |
Target: 5'- gGCCCgcgugguguaacagGCCGGGGGCGggcGC-CGCCcccgaucacgaAUCCa -3' miRNA: 3'- -CGGG--------------UGGCUCCUGCa--CGaGCGG-----------UAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 13853 | 0.69 | 0.344435 |
Target: 5'- aGCgCACCGcgcuGGACGaUGCcaaggCGCuCAUCCu -3' miRNA: 3'- -CGgGUGGCu---CCUGC-ACGa----GCG-GUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 27704 | 0.69 | 0.344435 |
Target: 5'- cGCgCGCCGGcaGCG-GCUCGCCG-CCg -3' miRNA: 3'- -CGgGUGGCUccUGCaCGAGCGGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 27878 | 0.69 | 0.35268 |
Target: 5'- cGCUCGCCaucuuGGCGUGCUCGCCcagcacGUCg -3' miRNA: 3'- -CGGGUGGcuc--CUGCACGAGCGG------UAGg -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 14985 | 0.68 | 0.387033 |
Target: 5'- gGCCCAUCGucaAGGGCGacgaccaCGCCAUCUg -3' miRNA: 3'- -CGGGUGGC---UCCUGCacga---GCGGUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 36229 | 0.68 | 0.387033 |
Target: 5'- cGCCUgauuGCCGAcGugGgccgGUUCGCCAcCCa -3' miRNA: 3'- -CGGG----UGGCUcCugCa---CGAGCGGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 33382 | 0.68 | 0.387033 |
Target: 5'- gGCgCGCCGcAGaACGUGCgccgCGCCG-CCg -3' miRNA: 3'- -CGgGUGGC-UCcUGCACGa---GCGGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 31738 | 0.68 | 0.387033 |
Target: 5'- cGCCgACCGAagccacgcaGGGCcUGCUCGaCCA-CCu -3' miRNA: 3'- -CGGgUGGCU---------CCUGcACGAGC-GGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 24985 | 0.68 | 0.394164 |
Target: 5'- cGCCCACCcaccagcacaaaGGGGGCcgacgacagcgGgUUGCCGUCCg -3' miRNA: 3'- -CGGGUGG------------CUCCUGca---------CgAGCGGUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 42354 | 0.68 | 0.395959 |
Target: 5'- gGCaCCACCGGGGAaacccaGCgCGCCAaugCCg -3' miRNA: 3'- -CG-GGUGGCUCCUgca---CGaGCGGUa--GG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 33876 | 0.68 | 0.39596 |
Target: 5'- cGCCCGCCGGGcacaucuuCGUGUUCGgCAgcaaUCUg -3' miRNA: 3'- -CGGGUGGCUCcu------GCACGAGCgGU----AGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 13681 | 0.68 | 0.405017 |
Target: 5'- cGCgCACCguGAGGAUGUcgUCGgCGUCCa -3' miRNA: 3'- -CGgGUGG--CUCCUGCAcgAGCgGUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 4304 | 0.67 | 0.414204 |
Target: 5'- cGCCCAUguAGGACagcuUGCcggCGUCAUCCa -3' miRNA: 3'- -CGGGUGgcUCCUGc---ACGa--GCGGUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 14790 | 0.67 | 0.423519 |
Target: 5'- aGCgCGCgCGAGGACGUGCU-GCgG-CUg -3' miRNA: 3'- -CGgGUG-GCUCCUGCACGAgCGgUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 17964 | 0.67 | 0.424457 |
Target: 5'- uGCCCGCCGGcacgccaugugguucGACGUGC-CGCUGaCCu -3' miRNA: 3'- -CGGGUGGCUc--------------CUGCACGaGCGGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 31227 | 0.67 | 0.432958 |
Target: 5'- -gCCACCGAGGugccggGCGaGCaggUCGCCA-CCg -3' miRNA: 3'- cgGGUGGCUCC------UGCaCG---AGCGGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 18083 | 0.67 | 0.4561 |
Target: 5'- gGgCCGCCGAagccggcgcgaaccaGGACGccuucgCGCCGUCCg -3' miRNA: 3'- -CgGGUGGCU---------------CCUGCacga--GCGGUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 12190 | 0.67 | 0.461988 |
Target: 5'- cGCCaUGCCGAGcGaaaGCGUGgaCGCCGUUa -3' miRNA: 3'- -CGG-GUGGCUC-C---UGCACgaGCGGUAGg -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 17264 | 0.66 | 0.471892 |
Target: 5'- gGCaaGCCGGGGAUa---UUGCCGUCCa -3' miRNA: 3'- -CGggUGGCUCCUGcacgAGCGGUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 10747 | 0.66 | 0.471892 |
Target: 5'- uGCUCGCCaAGGGCGcGCUCGaCUucggCCc -3' miRNA: 3'- -CGGGUGGcUCCUGCaCGAGC-GGua--GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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