Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26711 | 3' | -58.5 | NC_005808.1 | + | 10747 | 0.66 | 0.471892 |
Target: 5'- uGCUCGCCaAGGGCGcGCUCGaCUucggCCc -3' miRNA: 3'- -CGGGUGGcUCCUGCaCGAGC-GGua--GG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 17264 | 0.66 | 0.471892 |
Target: 5'- gGCaaGCCGGGGAUa---UUGCCGUCCa -3' miRNA: 3'- -CGggUGGCUCCUGcacgAGCGGUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 32540 | 0.66 | 0.471892 |
Target: 5'- uGCCgGCC-AGGAUGcUGC-CGCCGgcgaugCCg -3' miRNA: 3'- -CGGgUGGcUCCUGC-ACGaGCGGUa-----GG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 23953 | 0.66 | 0.481901 |
Target: 5'- cGCCCGgCGAGGuCG-GCauUUGCCgAUUCa -3' miRNA: 3'- -CGGGUgGCUCCuGCaCG--AGCGG-UAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 40253 | 0.66 | 0.481901 |
Target: 5'- uGCCCAgcaacagaUCGAGGACaG-GCUgCGCgAUCUg -3' miRNA: 3'- -CGGGU--------GGCUCCUG-CaCGA-GCGgUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 16771 | 0.66 | 0.481901 |
Target: 5'- -gCCACCGGcGACGUGaaggcgauggUCGCCAguugCCa -3' miRNA: 3'- cgGGUGGCUcCUGCACg---------AGCGGUa---GG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 7170 | 0.66 | 0.490996 |
Target: 5'- gGCCgGgcgcuugucggauUCGGGGGCGacgcuggGCUUGCCAUCg -3' miRNA: 3'- -CGGgU-------------GGCUCCUGCa------CGAGCGGUAGg -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 10739 | 0.66 | 0.492012 |
Target: 5'- uGCaCGgCGAGGGCGUGC-CGCaggaAUUCu -3' miRNA: 3'- -CGgGUgGCUCCUGCACGaGCGg---UAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 36206 | 0.66 | 0.50222 |
Target: 5'- -aUCACCGAGGGCGccgcgGCg-GCCGaCCu -3' miRNA: 3'- cgGGUGGCUCCUGCa----CGagCGGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 1902 | 0.66 | 0.511486 |
Target: 5'- cGCCCgcuugACCGAGGACuUGCgcagCagcuuguggguggGCCAuaUCCg -3' miRNA: 3'- -CGGG-----UGGCUCCUGcACGa---G-------------CGGU--AGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 16560 | 0.66 | 0.51252 |
Target: 5'- cGCCCGCCGc--GCGgGCUuugaUGCCAUCg -3' miRNA: 3'- -CGGGUGGCuccUGCaCGA----GCGGUAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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