Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26711 | 3' | -58.5 | NC_005808.1 | + | 26266 | 0.7 | 0.276538 |
Target: 5'- aCCCGCCGGccuGGuCG-GCUCGCgCAUCg -3' miRNA: 3'- cGGGUGGCU---CCuGCaCGAGCG-GUAGg -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 25441 | 0.7 | 0.272413 |
Target: 5'- gGCgCAUCGAcGACGUGaaguaccaaagcggcCUCGCCAUCUg -3' miRNA: 3'- -CGgGUGGCUcCUGCAC---------------GAGCGGUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 29941 | 0.71 | 0.24997 |
Target: 5'- gGCUUGCCagucAGGugGUGCUUGUCGUCg -3' miRNA: 3'- -CGGGUGGc---UCCugCACGAGCGGUAGg -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 6531 | 0.71 | 0.245543 |
Target: 5'- cGCCCACaguucgaugcuggCGuuGACGUagcagcccgcguaggGCUUGCCAUCCg -3' miRNA: 3'- -CGGGUG-------------GCucCUGCA---------------CGAGCGGUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 32461 | 0.71 | 0.243665 |
Target: 5'- cGCCCccuacuGCCGAGGugGggGCggccgaugCGCCcgaAUCCa -3' miRNA: 3'- -CGGG------UGGCUCCugCa-CGa-------GCGG---UAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 31901 | 0.71 | 0.231454 |
Target: 5'- aUCgGCCGAGGcCGUGCgcgcUGCCGUCa -3' miRNA: 3'- cGGgUGGCUCCuGCACGa---GCGGUAGg -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 32674 | 0.72 | 0.208579 |
Target: 5'- uGCCCGacgugaagcCCGAGcaguucgccGACGUGCUCGCCGc-- -3' miRNA: 3'- -CGGGU---------GGCUC---------CUGCACGAGCGGUagg -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 18028 | 0.72 | 0.203173 |
Target: 5'- gGCCCgACCGuGGcCG-GcCUCGCCAUCg -3' miRNA: 3'- -CGGG-UGGCuCCuGCaC-GAGCGGUAGg -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 33276 | 0.76 | 0.10877 |
Target: 5'- cGCCCGCCGcgccGACGUGCgcCGCCAggucgCCg -3' miRNA: 3'- -CGGGUGGCuc--CUGCACGa-GCGGUa----GG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 328 | 0.8 | 0.058362 |
Target: 5'- uGCCgUACCGGGGgucgugccacACGUGCUCGCCGaCCa -3' miRNA: 3'- -CGG-GUGGCUCC----------UGCACGAGCGGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 14635 | 1.12 | 0.000227 |
Target: 5'- aGCCCACCGAGGACGUGCUCGCCAUCCc -3' miRNA: 3'- -CGGGUGGCUCCUGCACGAGCGGUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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