Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26711 | 3' | -58.5 | NC_005808.1 | + | 16771 | 0.66 | 0.481901 |
Target: 5'- -gCCACCGGcGACGUGaaggcgauggUCGCCAguugCCa -3' miRNA: 3'- cgGGUGGCUcCUGCACg---------AGCGGUa---GG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 17264 | 0.66 | 0.471892 |
Target: 5'- gGCaaGCCGGGGAUa---UUGCCGUCCa -3' miRNA: 3'- -CGggUGGCUCCUGcacgAGCGGUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 17964 | 0.67 | 0.424457 |
Target: 5'- uGCCCGCCGGcacgccaugugguucGACGUGC-CGCUGaCCu -3' miRNA: 3'- -CGGGUGGCUc--------------CUGCACGaGCGGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 18028 | 0.72 | 0.203173 |
Target: 5'- gGCCCgACCGuGGcCG-GcCUCGCCAUCg -3' miRNA: 3'- -CGGG-UGGCuCCuGCaC-GAGCGGUAGg -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 18083 | 0.67 | 0.4561 |
Target: 5'- gGgCCGCCGAagccggcgcgaaccaGGACGccuucgCGCCGUCCg -3' miRNA: 3'- -CgGGUGGCU---------------CCUGCacga--GCGGUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 18929 | 0.69 | 0.33633 |
Target: 5'- gGCCCgACCGAGGGuCGccuggugcaguUGCUgcCGCCG-CCg -3' miRNA: 3'- -CGGG-UGGCUCCU-GC-----------ACGA--GCGGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 21886 | 0.69 | 0.312857 |
Target: 5'- gGCCUGauGGGGugccCGUGcCUCGUCGUCCa -3' miRNA: 3'- -CGGGUggCUCCu---GCAC-GAGCGGUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 23920 | 0.69 | 0.341989 |
Target: 5'- gGCCCgcgugguguaacagGCCGGGGGCGggcGC-CGCCcccgaucacgaAUCCa -3' miRNA: 3'- -CGGG--------------UGGCUCCUGCa--CGaGCGG-----------UAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 23953 | 0.66 | 0.481901 |
Target: 5'- cGCCCGgCGAGGuCG-GCauUUGCCgAUUCa -3' miRNA: 3'- -CGGGUgGCUCCuGCaCG--AGCGG-UAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 24985 | 0.68 | 0.394164 |
Target: 5'- cGCCCACCcaccagcacaaaGGGGGCcgacgacagcgGgUUGCCGUCCg -3' miRNA: 3'- -CGGGUGG------------CUCCUGca---------CgAGCGGUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 25441 | 0.7 | 0.272413 |
Target: 5'- gGCgCAUCGAcGACGUGaaguaccaaagcggcCUCGCCAUCUg -3' miRNA: 3'- -CGgGUGGCUcCUGCAC---------------GAGCGGUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 26266 | 0.7 | 0.276538 |
Target: 5'- aCCCGCCGGccuGGuCG-GCUCGCgCAUCg -3' miRNA: 3'- cGGGUGGCU---CCuGCaCGAGCG-GUAGg -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 27236 | 0.7 | 0.276538 |
Target: 5'- cGCUCACCGAGGugaaGCagCGCaCGUCCg -3' miRNA: 3'- -CGGGUGGCUCCugcaCGa-GCG-GUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 27704 | 0.69 | 0.344435 |
Target: 5'- cGCgCGCCGGcaGCG-GCUCGCCG-CCg -3' miRNA: 3'- -CGgGUGGCUccUGCaCGAGCGGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 27878 | 0.69 | 0.35268 |
Target: 5'- cGCUCGCCaucuuGGCGUGCUCGCCcagcacGUCg -3' miRNA: 3'- -CGGGUGGcuc--CUGCACGAGCGG------UAGg -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 29941 | 0.71 | 0.24997 |
Target: 5'- gGCUUGCCagucAGGugGUGCUUGUCGUCg -3' miRNA: 3'- -CGGGUGGc---UCCugCACGAGCGGUAGg -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 31227 | 0.67 | 0.432958 |
Target: 5'- -gCCACCGAGGugccggGCGaGCaggUCGCCA-CCg -3' miRNA: 3'- cgGGUGGCUCC------UGCaCG---AGCGGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 31738 | 0.68 | 0.387033 |
Target: 5'- cGCCgACCGAagccacgcaGGGCcUGCUCGaCCA-CCu -3' miRNA: 3'- -CGGgUGGCU---------CCUGcACGAGC-GGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 31901 | 0.71 | 0.231454 |
Target: 5'- aUCgGCCGAGGcCGUGCgcgcUGCCGUCa -3' miRNA: 3'- cGGgUGGCUCCuGCACGa---GCGGUAGg -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 32461 | 0.71 | 0.243665 |
Target: 5'- cGCCCccuacuGCCGAGGugGggGCggccgaugCGCCcgaAUCCa -3' miRNA: 3'- -CGGG------UGGCUCCugCa-CGa-------GCGG---UAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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