miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26711 3' -58.5 NC_005808.1 + 32540 0.66 0.471892
Target:  5'- uGCCgGCC-AGGAUGcUGC-CGCCGgcgaugCCg -3'
miRNA:   3'- -CGGgUGGcUCCUGC-ACGaGCGGUa-----GG- -5'
26711 3' -58.5 NC_005808.1 + 32674 0.72 0.208579
Target:  5'- uGCCCGacgugaagcCCGAGcaguucgccGACGUGCUCGCCGc-- -3'
miRNA:   3'- -CGGGU---------GGCUC---------CUGCACGAGCGGUagg -5'
26711 3' -58.5 NC_005808.1 + 33276 0.76 0.10877
Target:  5'- cGCCCGCCGcgccGACGUGCgcCGCCAggucgCCg -3'
miRNA:   3'- -CGGGUGGCuc--CUGCACGa-GCGGUa----GG- -5'
26711 3' -58.5 NC_005808.1 + 33382 0.68 0.387033
Target:  5'- gGCgCGCCGcAGaACGUGCgccgCGCCG-CCg -3'
miRNA:   3'- -CGgGUGGC-UCcUGCACGa---GCGGUaGG- -5'
26711 3' -58.5 NC_005808.1 + 33876 0.68 0.39596
Target:  5'- cGCCCGCCGGGcacaucuuCGUGUUCGgCAgcaaUCUg -3'
miRNA:   3'- -CGGGUGGCUCcu------GCACGAGCgGU----AGG- -5'
26711 3' -58.5 NC_005808.1 + 36206 0.66 0.50222
Target:  5'- -aUCACCGAGGGCGccgcgGCg-GCCGaCCu -3'
miRNA:   3'- cgGGUGGCUCCUGCa----CGagCGGUaGG- -5'
26711 3' -58.5 NC_005808.1 + 36229 0.68 0.387033
Target:  5'- cGCCUgauuGCCGAcGugGgccgGUUCGCCAcCCa -3'
miRNA:   3'- -CGGG----UGGCUcCugCa---CGAGCGGUaGG- -5'
26711 3' -58.5 NC_005808.1 + 38389 0.69 0.33633
Target:  5'- aGCCgcaaGCCGc-GACGUGCUCGCgG-CCa -3'
miRNA:   3'- -CGGg---UGGCucCUGCACGAGCGgUaGG- -5'
26711 3' -58.5 NC_005808.1 + 40253 0.66 0.481901
Target:  5'- uGCCCAgcaacagaUCGAGGACaG-GCUgCGCgAUCUg -3'
miRNA:   3'- -CGGGU--------GGCUCCUG-CaCGA-GCGgUAGG- -5'
26711 3' -58.5 NC_005808.1 + 40893 0.7 0.29791
Target:  5'- -gCCACCGAcacgauGGACGaauugguaugGCUCGCCgcgaGUCCa -3'
miRNA:   3'- cgGGUGGCU------CCUGCa---------CGAGCGG----UAGG- -5'
26711 3' -58.5 NC_005808.1 + 42354 0.68 0.395959
Target:  5'- gGCaCCACCGGGGAaacccaGCgCGCCAaugCCg -3'
miRNA:   3'- -CG-GGUGGCUCCUgca---CGaGCGGUa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.