Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26711 | 3' | -58.5 | NC_005808.1 | + | 42354 | 0.68 | 0.395959 |
Target: 5'- gGCaCCACCGGGGAaacccaGCgCGCCAaugCCg -3' miRNA: 3'- -CG-GGUGGCUCCUgca---CGaGCGGUa--GG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 40893 | 0.7 | 0.29791 |
Target: 5'- -gCCACCGAcacgauGGACGaauugguaugGCUCGCCgcgaGUCCa -3' miRNA: 3'- cgGGUGGCU------CCUGCa---------CGAGCGG----UAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 40253 | 0.66 | 0.481901 |
Target: 5'- uGCCCAgcaacagaUCGAGGACaG-GCUgCGCgAUCUg -3' miRNA: 3'- -CGGGU--------GGCUCCUG-CaCGA-GCGgUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 38389 | 0.69 | 0.33633 |
Target: 5'- aGCCgcaaGCCGc-GACGUGCUCGCgG-CCa -3' miRNA: 3'- -CGGg---UGGCucCUGCACGAGCGgUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 36229 | 0.68 | 0.387033 |
Target: 5'- cGCCUgauuGCCGAcGugGgccgGUUCGCCAcCCa -3' miRNA: 3'- -CGGG----UGGCUcCugCa---CGAGCGGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 36206 | 0.66 | 0.50222 |
Target: 5'- -aUCACCGAGGGCGccgcgGCg-GCCGaCCu -3' miRNA: 3'- cgGGUGGCUCCUGCa----CGagCGGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 33876 | 0.68 | 0.39596 |
Target: 5'- cGCCCGCCGGGcacaucuuCGUGUUCGgCAgcaaUCUg -3' miRNA: 3'- -CGGGUGGCUCcu------GCACGAGCgGU----AGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 33382 | 0.68 | 0.387033 |
Target: 5'- gGCgCGCCGcAGaACGUGCgccgCGCCG-CCg -3' miRNA: 3'- -CGgGUGGC-UCcUGCACGa---GCGGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 33276 | 0.76 | 0.10877 |
Target: 5'- cGCCCGCCGcgccGACGUGCgcCGCCAggucgCCg -3' miRNA: 3'- -CGGGUGGCuc--CUGCACGa-GCGGUa----GG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 32674 | 0.72 | 0.208579 |
Target: 5'- uGCCCGacgugaagcCCGAGcaguucgccGACGUGCUCGCCGc-- -3' miRNA: 3'- -CGGGU---------GGCUC---------CUGCACGAGCGGUagg -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 32540 | 0.66 | 0.471892 |
Target: 5'- uGCCgGCC-AGGAUGcUGC-CGCCGgcgaugCCg -3' miRNA: 3'- -CGGgUGGcUCCUGC-ACGaGCGGUa-----GG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 32461 | 0.71 | 0.243665 |
Target: 5'- cGCCCccuacuGCCGAGGugGggGCggccgaugCGCCcgaAUCCa -3' miRNA: 3'- -CGGG------UGGCUCCugCa-CGa-------GCGG---UAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 31901 | 0.71 | 0.231454 |
Target: 5'- aUCgGCCGAGGcCGUGCgcgcUGCCGUCa -3' miRNA: 3'- cGGgUGGCUCCuGCACGa---GCGGUAGg -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 31738 | 0.68 | 0.387033 |
Target: 5'- cGCCgACCGAagccacgcaGGGCcUGCUCGaCCA-CCu -3' miRNA: 3'- -CGGgUGGCU---------CCUGcACGAGC-GGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 31227 | 0.67 | 0.432958 |
Target: 5'- -gCCACCGAGGugccggGCGaGCaggUCGCCA-CCg -3' miRNA: 3'- cgGGUGGCUCC------UGCaCG---AGCGGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 29941 | 0.71 | 0.24997 |
Target: 5'- gGCUUGCCagucAGGugGUGCUUGUCGUCg -3' miRNA: 3'- -CGGGUGGc---UCCugCACGAGCGGUAGg -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 27878 | 0.69 | 0.35268 |
Target: 5'- cGCUCGCCaucuuGGCGUGCUCGCCcagcacGUCg -3' miRNA: 3'- -CGGGUGGcuc--CUGCACGAGCGG------UAGg -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 27704 | 0.69 | 0.344435 |
Target: 5'- cGCgCGCCGGcaGCG-GCUCGCCG-CCg -3' miRNA: 3'- -CGgGUGGCUccUGCaCGAGCGGUaGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 27236 | 0.7 | 0.276538 |
Target: 5'- cGCUCACCGAGGugaaGCagCGCaCGUCCg -3' miRNA: 3'- -CGGGUGGCUCCugcaCGa-GCG-GUAGG- -5' |
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26711 | 3' | -58.5 | NC_005808.1 | + | 26266 | 0.7 | 0.276538 |
Target: 5'- aCCCGCCGGccuGGuCG-GCUCGCgCAUCg -3' miRNA: 3'- cGGGUGGCU---CCuGCaCGAGCG-GUAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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