miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26711 3' -58.5 NC_005808.1 + 25441 0.7 0.272413
Target:  5'- gGCgCAUCGAcGACGUGaaguaccaaagcggcCUCGCCAUCUg -3'
miRNA:   3'- -CGgGUGGCUcCUGCAC---------------GAGCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 24985 0.68 0.394164
Target:  5'- cGCCCACCcaccagcacaaaGGGGGCcgacgacagcgGgUUGCCGUCCg -3'
miRNA:   3'- -CGGGUGG------------CUCCUGca---------CgAGCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 23953 0.66 0.481901
Target:  5'- cGCCCGgCGAGGuCG-GCauUUGCCgAUUCa -3'
miRNA:   3'- -CGGGUgGCUCCuGCaCG--AGCGG-UAGG- -5'
26711 3' -58.5 NC_005808.1 + 23920 0.69 0.341989
Target:  5'- gGCCCgcgugguguaacagGCCGGGGGCGggcGC-CGCCcccgaucacgaAUCCa -3'
miRNA:   3'- -CGGG--------------UGGCUCCUGCa--CGaGCGG-----------UAGG- -5'
26711 3' -58.5 NC_005808.1 + 21886 0.69 0.312857
Target:  5'- gGCCUGauGGGGugccCGUGcCUCGUCGUCCa -3'
miRNA:   3'- -CGGGUggCUCCu---GCAC-GAGCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 18929 0.69 0.33633
Target:  5'- gGCCCgACCGAGGGuCGccuggugcaguUGCUgcCGCCG-CCg -3'
miRNA:   3'- -CGGG-UGGCUCCU-GC-----------ACGA--GCGGUaGG- -5'
26711 3' -58.5 NC_005808.1 + 18083 0.67 0.4561
Target:  5'- gGgCCGCCGAagccggcgcgaaccaGGACGccuucgCGCCGUCCg -3'
miRNA:   3'- -CgGGUGGCU---------------CCUGCacga--GCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 18028 0.72 0.203173
Target:  5'- gGCCCgACCGuGGcCG-GcCUCGCCAUCg -3'
miRNA:   3'- -CGGG-UGGCuCCuGCaC-GAGCGGUAGg -5'
26711 3' -58.5 NC_005808.1 + 17964 0.67 0.424457
Target:  5'- uGCCCGCCGGcacgccaugugguucGACGUGC-CGCUGaCCu -3'
miRNA:   3'- -CGGGUGGCUc--------------CUGCACGaGCGGUaGG- -5'
26711 3' -58.5 NC_005808.1 + 17264 0.66 0.471892
Target:  5'- gGCaaGCCGGGGAUa---UUGCCGUCCa -3'
miRNA:   3'- -CGggUGGCUCCUGcacgAGCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 16771 0.66 0.481901
Target:  5'- -gCCACCGGcGACGUGaaggcgauggUCGCCAguugCCa -3'
miRNA:   3'- cgGGUGGCUcCUGCACg---------AGCGGUa---GG- -5'
26711 3' -58.5 NC_005808.1 + 16560 0.66 0.51252
Target:  5'- cGCCCGCCGc--GCGgGCUuugaUGCCAUCg -3'
miRNA:   3'- -CGGGUGGCuccUGCaCGA----GCGGUAGg -5'
26711 3' -58.5 NC_005808.1 + 14985 0.68 0.387033
Target:  5'- gGCCCAUCGucaAGGGCGacgaccaCGCCAUCUg -3'
miRNA:   3'- -CGGGUGGC---UCCUGCacga---GCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 14790 0.67 0.423519
Target:  5'- aGCgCGCgCGAGGACGUGCU-GCgG-CUg -3'
miRNA:   3'- -CGgGUG-GCUCCUGCACGAgCGgUaGG- -5'
26711 3' -58.5 NC_005808.1 + 14635 1.12 0.000227
Target:  5'- aGCCCACCGAGGACGUGCUCGCCAUCCc -3'
miRNA:   3'- -CGGGUGGCUCCUGCACGAGCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 13853 0.69 0.344435
Target:  5'- aGCgCACCGcgcuGGACGaUGCcaaggCGCuCAUCCu -3'
miRNA:   3'- -CGgGUGGCu---CCUGC-ACGa----GCG-GUAGG- -5'
26711 3' -58.5 NC_005808.1 + 13681 0.68 0.405017
Target:  5'- cGCgCACCguGAGGAUGUcgUCGgCGUCCa -3'
miRNA:   3'- -CGgGUGG--CUCCUGCAcgAGCgGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 13564 0.7 0.305313
Target:  5'- uGCCCACgGc-GAUGUugaacgcgcGCUCGCCAUCg -3'
miRNA:   3'- -CGGGUGgCucCUGCA---------CGAGCGGUAGg -5'
26711 3' -58.5 NC_005808.1 + 13504 0.7 0.305313
Target:  5'- cGCCUuugGgCGAGGuaaGCG-GUUUGCCGUCCg -3'
miRNA:   3'- -CGGG---UgGCUCC---UGCaCGAGCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 12190 0.67 0.461988
Target:  5'- cGCCaUGCCGAGcGaaaGCGUGgaCGCCGUUa -3'
miRNA:   3'- -CGG-GUGGCUC-C---UGCACgaGCGGUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.