miRNA display CGI


Results 41 - 51 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26711 3' -58.5 NC_005808.1 + 10747 0.66 0.471892
Target:  5'- uGCUCGCCaAGGGCGcGCUCGaCUucggCCc -3'
miRNA:   3'- -CGGGUGGcUCCUGCaCGAGC-GGua--GG- -5'
26711 3' -58.5 NC_005808.1 + 10739 0.66 0.492012
Target:  5'- uGCaCGgCGAGGGCGUGC-CGCaggaAUUCu -3'
miRNA:   3'- -CGgGUgGCUCCUGCACGaGCGg---UAGG- -5'
26711 3' -58.5 NC_005808.1 + 9810 0.66 0.471892
Target:  5'- aGCaCCagcgagguGCCGAGGGCGgacUUCGCCG-CCu -3'
miRNA:   3'- -CG-GG--------UGGCUCCUGCac-GAGCGGUaGG- -5'
26711 3' -58.5 NC_005808.1 + 7995 0.66 0.471892
Target:  5'- aGCaCCACgGcgucGGACGUGCccuuggCGCCAgcuucgCCg -3'
miRNA:   3'- -CG-GGUGgCu---CCUGCACGa-----GCGGUa-----GG- -5'
26711 3' -58.5 NC_005808.1 + 7170 0.66 0.490996
Target:  5'- gGCCgGgcgcuugucggauUCGGGGGCGacgcuggGCUUGCCAUCg -3'
miRNA:   3'- -CGGgU-------------GGCUCCUGCa------CGAGCGGUAGg -5'
26711 3' -58.5 NC_005808.1 + 6531 0.71 0.245543
Target:  5'- cGCCCACaguucgaugcuggCGuuGACGUagcagcccgcguaggGCUUGCCAUCCg -3'
miRNA:   3'- -CGGGUG-------------GCucCUGCA---------------CGAGCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 5217 0.7 0.29791
Target:  5'- uGCCCACguCGAGGAUGuUGgaCGCCAc-- -3'
miRNA:   3'- -CGGGUG--GCUCCUGC-ACgaGCGGUagg -5'
26711 3' -58.5 NC_005808.1 + 4304 0.67 0.414204
Target:  5'- cGCCCAUguAGGACagcuUGCcggCGUCAUCCa -3'
miRNA:   3'- -CGGGUGgcUCCUGc---ACGa--GCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 3902 0.69 0.323654
Target:  5'- cGCCgAacuugguagauuucuUCGGGGACGcGCU-GCCGUCCg -3'
miRNA:   3'- -CGGgU---------------GGCUCCUGCaCGAgCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 1902 0.66 0.511486
Target:  5'- cGCCCgcuugACCGAGGACuUGCgcagCagcuuguggguggGCCAuaUCCg -3'
miRNA:   3'- -CGGG-----UGGCUCCUGcACGa---G-------------CGGU--AGG- -5'
26711 3' -58.5 NC_005808.1 + 328 0.8 0.058362
Target:  5'- uGCCgUACCGGGGgucgugccacACGUGCUCGCCGaCCa -3'
miRNA:   3'- -CGG-GUGGCUCC----------UGCACGAGCGGUaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.