miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26711 3' -58.5 NC_005808.1 + 33276 0.76 0.10877
Target:  5'- cGCCCGCCGcgccGACGUGCgcCGCCAggucgCCg -3'
miRNA:   3'- -CGGGUGGCuc--CUGCACGa-GCGGUa----GG- -5'
26711 3' -58.5 NC_005808.1 + 18028 0.72 0.203173
Target:  5'- gGCCCgACCGuGGcCG-GcCUCGCCAUCg -3'
miRNA:   3'- -CGGG-UGGCuCCuGCaC-GAGCGGUAGg -5'
26711 3' -58.5 NC_005808.1 + 31901 0.71 0.231454
Target:  5'- aUCgGCCGAGGcCGUGCgcgcUGCCGUCa -3'
miRNA:   3'- cGGgUGGCUCCuGCACGa---GCGGUAGg -5'
26711 3' -58.5 NC_005808.1 + 6531 0.71 0.245543
Target:  5'- cGCCCACaguucgaugcuggCGuuGACGUagcagcccgcguaggGCUUGCCAUCCg -3'
miRNA:   3'- -CGGGUG-------------GCucCUGCA---------------CGAGCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 25441 0.7 0.272413
Target:  5'- gGCgCAUCGAcGACGUGaaguaccaaagcggcCUCGCCAUCUg -3'
miRNA:   3'- -CGgGUGGCUcCUGCAC---------------GAGCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 27236 0.7 0.276538
Target:  5'- cGCUCACCGAGGugaaGCagCGCaCGUCCg -3'
miRNA:   3'- -CGGGUGGCUCCugcaCGa-GCG-GUAGG- -5'
26711 3' -58.5 NC_005808.1 + 21886 0.69 0.312857
Target:  5'- gGCCUGauGGGGugccCGUGcCUCGUCGUCCa -3'
miRNA:   3'- -CGGGUggCUCCu---GCAC-GAGCGGUAGG- -5'
26711 3' -58.5 NC_005808.1 + 18929 0.69 0.33633
Target:  5'- gGCCCgACCGAGGGuCGccuggugcaguUGCUgcCGCCG-CCg -3'
miRNA:   3'- -CGGG-UGGCUCCU-GC-----------ACGA--GCGGUaGG- -5'
26711 3' -58.5 NC_005808.1 + 23920 0.69 0.341989
Target:  5'- gGCCCgcgugguguaacagGCCGGGGGCGggcGC-CGCCcccgaucacgaAUCCa -3'
miRNA:   3'- -CGGG--------------UGGCUCCUGCa--CGaGCGG-----------UAGG- -5'
26711 3' -58.5 NC_005808.1 + 13853 0.69 0.344435
Target:  5'- aGCgCACCGcgcuGGACGaUGCcaaggCGCuCAUCCu -3'
miRNA:   3'- -CGgGUGGCu---CCUGC-ACGa----GCG-GUAGG- -5'
26711 3' -58.5 NC_005808.1 + 14635 1.12 0.000227
Target:  5'- aGCCCACCGAGGACGUGCUCGCCAUCCc -3'
miRNA:   3'- -CGGGUGGCUCCUGCACGAGCGGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.